Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03181 and EFB2_03182 are separated by 72 nucleotidesEFB2_03182 and EFB2_03183 overlap by 4 nucleotidesEFB2_03183 and EFB2_03184 are separated by 132 nucleotidesEFB2_03184 and EFB2_03185 overlap by 4 nucleotides EFB2_03181: EFB2_03181 - Cold shock-like protein CspD, at 3,339,124 to 3,339,348 _03181 EFB2_03182: EFB2_03182 - Macrolide export ATP-binding/permease protein MacB, at 3,339,421 to 3,341,367 _03182 EFB2_03183: EFB2_03183 - Macrolide export protein MacA, at 3,341,364 to 3,342,461 _03183 EFB2_03184: EFB2_03184 - hypothetical protein, at 3,342,594 to 3,343,586 _03184 EFB2_03185: EFB2_03185 - hypothetical protein, at 3,343,583 to 3,345,241 _03185
Group Condition EFB2_03181 EFB2_03182 EFB2_03183 EFB2_03184 EFB2_03185
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 +0.1 +0.0 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 -0.0 -0.2 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.1 -0.1 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.0 -0.3 +0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.1 -0.2 +0.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.3 -0.0 +0.0 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.1 -0.1 -0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 +0.0 +0.0 -0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.0 -0.3 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 +0.0 -0.3 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 +0.1 +0.2 -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 -0.0 +0.0 +0.0 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.1 -0.1 -0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.1 +0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 -0.1 -0.1 +0.3
mixed community no phage control BHIS no phage control with 14 member community +0.0 +0.1 -0.2 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.4 -0.0 -0.1 -0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.0 -0.1 -0.2 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.0 -0.2 -0.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.0 -0.0 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.0 +0.0 -0.2 +0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.3 -0.1 -0.1 +0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.0 +0.2 +0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.2 +0.1 +0.2 +0.2
mixed community no phage control BHIS no phage control with 14 member community +0.5 -0.1 -0.1 -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.2 +0.0 +0.0 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 +0.2 +0.0 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 -0.0 -0.1 +0.2 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.2 +0.1 +0.0 +0.3
no phage control BHIS_CaCl2 no phage control +0.8 +0.1 -0.2 -0.2 +0.4
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EFB2_03181
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