Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03141 and EFB2_03142 overlap by 20 nucleotidesEFB2_03142 and EFB2_03143 overlap by 4 nucleotidesEFB2_03143 and EFB2_03144 are separated by 135 nucleotidesEFB2_03144 and EFB2_03145 overlap by 24 nucleotides EFB2_03141: EFB2_03141 - Chromosome partition protein MukE, at 3,288,535 to 3,289,239 _03141 EFB2_03142: EFB2_03142 - Chromosome partition protein MukF, at 3,289,220 to 3,290,542 _03142 EFB2_03143: EFB2_03143 - tRNA 5-carboxymethoxyuridine methyltransferase, at 3,290,539 to 3,291,324 _03143 EFB2_03144: EFB2_03144 - hypothetical protein, at 3,291,460 to 3,292,239 _03144 EFB2_03145: EFB2_03145 - hypothetical protein, at 3,292,216 to 3,293,109 _03145
Group Condition EFB2_03141 EFB2_03142 EFB2_03143 EFB2_03144 EFB2_03145
no phage control BHIS_CaCl2 no phage control N.D. N.D. +0.1 -0.9 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. N.D. -0.2 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. N.D. -0.0 -0.3 -0.1
no phage control BHIS no phage control N.D. N.D. -0.2 -0.0 +0.0
mixed community no phage control BHIS no phage control with 14 member community N.D. N.D. -0.1 -0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community N.D. N.D. -0.3 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -0.2 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.0 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. +0.0 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.0 +0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.1 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. -0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.1 +0.1 -0.3
no phage control BHIS no phage control N.D. N.D. -0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.2 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.3 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.0 -0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.1 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. N.D. -0.0 +0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.2 +0.1 -0.2
no phage control BHIS_CaCl2 no phage control N.D. N.D. -0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. +0.0 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.2 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. +0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. +0.1 +0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. +0.0 +0.3 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.2 +0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. +0.2 +0.1 +0.0
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