Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03135 and EFB2_03136 are separated by 184 nucleotidesEFB2_03136 and EFB2_03137 are separated by 49 nucleotidesEFB2_03137 and EFB2_03138 are separated by 26 nucleotidesEFB2_03138 and EFB2_03139 are separated by 180 nucleotides EFB2_03135: EFB2_03135 - Outer membrane porin F, at 3,278,051 to 3,279,139 _03135 EFB2_03136: EFB2_03136 - Aspartate aminotransferase, at 3,279,324 to 3,280,514 _03136 EFB2_03137: EFB2_03137 - Hydroxyacylglutathione hydrolase GloC, at 3,280,564 to 3,281,211 _03137 EFB2_03138: EFB2_03138 - hypothetical protein, at 3,281,238 to 3,281,786 _03138 EFB2_03139: EFB2_03139 - putative L,D-transpeptidase YcbB, at 3,281,967 to 3,283,814 _03139
Group Condition EFB2_03135 EFB2_03136 EFB2_03137 EFB2_03138 EFB2_03139
no phage control BHIS_CaCl2 no phage control +0.1 -0.1 -0.8 -0.7 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.4 -0.1 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.5 -0.1 -0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.7 -0.1 +0.3 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.6 +0.3 -0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.7 +0.1 +0.3 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.4 -0.2 +0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.6 +0.2 +0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.6 +0.2 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.7 +0.4 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.0 -0.5 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.7 +0.1 +0.4 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.5 -0.0 +0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.2 -0.2 +0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.4 -0.0 +0.4 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.2 -0.1 +0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.3 -0.2 +0.4 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.4 +0.1 +0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.3 +0.1 +0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.3 +0.1 +0.3 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.4 +0.4 +0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.3 -0.2 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.3 +0.1 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.1 -0.1 +0.4 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.2 +0.2 +0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 -0.3 +0.1 +0.4 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 -0.1 -0.1 +0.6 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.2 -0.1 +0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.4 +0.3 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.2 +0.2 +0.2 +0.0
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