Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02959 and EFB2_02960 are separated by 35 nucleotidesEFB2_02960 and EFB2_02961 are separated by 661 nucleotidesEFB2_02961 and EFB2_02962 are separated by 106 nucleotidesEFB2_02962 and EFB2_02963 are separated by 200 nucleotides EFB2_02959: EFB2_02959 - hypothetical protein, at 3,090,089 to 3,090,631 _02959 EFB2_02960: EFB2_02960 - Secretory immunoglobulin A-binding protein EsiB, at 3,090,667 to 3,091,803 _02960 EFB2_02961: EFB2_02961 - IS66 family transposase IS682, at 3,092,465 to 3,092,647 _02961 EFB2_02962: EFB2_02962 - Putative metal chaperone YciC, at 3,092,754 to 3,094,016 _02962 EFB2_02963: EFB2_02963 - hypothetical protein, at 3,094,217 to 3,095,008 _02963
Group Condition EFB2_02959 EFB2_02960 EFB2_02961 EFB2_02962 EFB2_02963
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.0 -1.3 -0.1 -0.1
no phage control BHIS no phage control -0.8 +0.1 -0.7 +0.2 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.0 -0.8 +0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community -0.7 -0.2 -0.3 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.2 -0.9 -0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.1 -0.3 -0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.6 -0.3 -1.1 -0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.5 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.1 -1.2 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.4 -0.1 -0.8 -0.2 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.5 +0.1 -0.5 +0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.9 +0.0 +0.3 +0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.6 -0.2 -0.8 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.1 -0.5 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.7 -0.0 -0.9 -0.2 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.2 +0.0 -0.4 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.8 -0.3 -0.7 +0.0 -0.2
no phage control BHIS_CaCl2 no phage control +0.4 -0.1 -0.4 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.4 -0.0 -0.4 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 -0.1 +0.6 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.4 -0.3 +0.5 -0.2 -0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 -0.1 +0.6 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 -0.0 +0.6 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.5 +0.1 +0.1 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 -0.1 +0.5 -0.3 -0.0
no phage control BHIS_CaCl2 no phage control +0.5 -0.2 +0.1 +0.2 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.5 -0.1 +0.2 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.3 +0.0 +0.5 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.4 -0.0 +0.6 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 +0.7 +0.1 -0.0
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