Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02945 and EFB2_02946 are separated by 46 nucleotidesEFB2_02946 and EFB2_02947 overlap by 41 nucleotidesEFB2_02947 and EFB2_02948 are separated by 18 nucleotidesEFB2_02948 and EFB2_02949 are separated by 62 nucleotides EFB2_02945: EFB2_02945 - Cytoskeleton-binding toxin CbtA, at 3,075,319 to 3,075,699 _02945 EFB2_02946: EFB2_02946 - hypothetical protein, at 3,075,746 to 3,076,210 _02946 EFB2_02947: EFB2_02947 - hypothetical protein, at 3,076,170 to 3,076,814 _02947 EFB2_02948: EFB2_02948 - hypothetical protein, at 3,076,833 to 3,077,054 _02948 EFB2_02949: EFB2_02949 - hypothetical protein, at 3,077,117 to 3,077,593 _02949
Group Condition EFB2_02945 EFB2_02946 EFB2_02947 EFB2_02948 EFB2_02949
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 -0.2 -0.2 -0.7
no phage control BHIS no phage control -0.3 -0.0 +0.2 -0.8 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.2 +0.1 -0.4 -0.8
no phage control BHIS no phage control -0.7 -0.1 +0.0 +0.4 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.2 -0.2 +0.0 +0.5 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.7 -0.4 -0.0 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.4 -0.4 -0.3 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.7 +0.4 -1.6 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.8 +0.1 +0.7 -0.1 -0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.0 -0.2 +0.4 -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.5 -0.3 +0.6 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 -0.0 +0.1 -0.2 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.1 -0.2 +0.1 +0.4 +0.7
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.4 -0.1 -0.6 +0.4
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.3 +0.7 -0.2 -0.3 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.4 +0.5 +0.0 -0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 +0.7 +0.3 +0.0 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.4 +0.3 +0.3 -0.6 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.3 -0.4 +0.5 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 +0.1 +0.0 +0.6 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -0.6 +0.4 +0.5 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.1 +0.6 -0.0 +0.4 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.2 +0.3 -0.3 +0.5 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 +0.4 +0.2 -0.4 +0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.5 +0.2 +0.0 +0.9
no phage control BHIS_CaCl2 no phage control -1.6 +0.2 +0.3 +0.6 +1.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.7 -0.2 +0.3 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.4 +0.0 +0.6 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.7 +0.6 +0.2 +0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.5 +0.4 -0.1 +0.4 +0.6
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