Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02929 and EFB2_02930 are separated by 120 nucleotidesEFB2_02930 and EFB2_02931 are separated by 58 nucleotidesEFB2_02931 and EFB2_02932 are separated by 40 nucleotidesEFB2_02932 and EFB2_02933 are separated by 752 nucleotides EFB2_02929: EFB2_02929 - putative protein YmdA, at 3,065,382 to 3,065,693 _02929 EFB2_02930: EFB2_02930 - Curli assembly protein CsgC, at 3,065,814 to 3,066,146 _02930 EFB2_02931: EFB2_02931 - Major curlin subunit, at 3,066,205 to 3,066,660 _02931 EFB2_02932: EFB2_02932 - Minor curlin subunit, at 3,066,701 to 3,067,156 _02932 EFB2_02933: EFB2_02933 - CsgBAC operon transcriptional regulatory protein, at 3,067,909 to 3,068,559 _02933
Group Condition EFB2_02929 EFB2_02930 EFB2_02931 EFB2_02932 EFB2_02933
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.3 -0.0 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.1 -0.7 -0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.2 -0.4 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.4 -0.3 +0.3 -0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.0 +0.1 -0.4 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.3 -0.3 -0.3 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.2 -0.0 -0.2 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.1 -0.1 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.2 -0.3 -0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.0 -0.2 -0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.2 -0.3 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.1 +0.2 -0.3 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.0 -0.2 +0.1 -0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -0.2 -0.1 +0.2 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 -0.2 -0.1 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.2 -0.2 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.1 -0.5 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.3 +0.0 -0.5 +0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 +0.0 -0.5 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.4 -0.1 -0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.1 +0.2 -0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.1 -0.1 +0.1 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 +0.0 -0.2 +0.2 -0.3
mixed community no phage control BHIS no phage control with 14 member community +0.2 -0.2 +0.2 +0.3 -0.3
no phage control BHIS_CaCl2 no phage control +0.2 -0.2 -0.1 +0.3 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.2 +0.2 +0.3 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -0.0 +0.4 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.4 -0.1 -0.2 +0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.2 +0.6 +0.3 -0.1
no phage control BHIS_CaCl2 no phage control +0.3 +0.1 +0.2 +0.1 +0.7
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EFB2_02929
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EFB2_02933
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