Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02902 and EFB2_02903 are separated by 75 nucleotidesEFB2_02903 and EFB2_02904 are separated by 4 nucleotidesEFB2_02904 and EFB2_02905 are separated by 39 nucleotidesEFB2_02905 and EFB2_02906 are separated by 109 nucleotides EFB2_02902: EFB2_02902 - Flagella basal body P-ring formation protein FlgA, at 3,040,242 to 3,040,901 _02902 EFB2_02903: EFB2_02903 - Negative regulator of flagellin synthesis, at 3,040,977 to 3,041,270 _02903 EFB2_02904: EFB2_02904 - Flagella synthesis protein FlgN, at 3,041,275 to 3,041,691 _02904 EFB2_02905: EFB2_02905 - Lipid II flippase MurJ, at 3,041,731 to 3,043,266 _02905 EFB2_02906: EFB2_02906 - Putative oxidoreductase YceM, at 3,043,376 to 3,044,299 _02906
Group Condition EFB2_02902 EFB2_02903 EFB2_02904 EFB2_02905 EFB2_02906
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 -2.1 +0.0 N.D. +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 -1.6 -0.3 N.D. +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -2.2 +0.3 N.D. -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.2 -1.4 +0.0 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 -0.6 -0.0 N.D. -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -1.2 +0.0 N.D. +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.7 -0.6 +0.1 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -1.0 -0.1 N.D. +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -1.2 -0.0 N.D. +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 -0.6 -0.1 N.D. +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.2 -1.2 +0.1 N.D. -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 -0.8 +0.2 N.D. -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -1.0 +0.1 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -1.0 +0.1 N.D. -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.4 +0.2 -0.4 N.D. -0.1
mixed community no phage control BHIS no phage control with 14 member community +0.1 -1.0 +0.2 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.6 -0.3 N.D. -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.9 +0.1 N.D. -0.1
no phage control BHIS no phage control -0.4 -0.5 +0.1 N.D. +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.9 +0.1 N.D. +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.3 -0.7 -0.1 N.D. +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.4 +0.2 N.D. +0.3
no phage control BHIS_CaCl2 no phage control +0.6 -0.9 +0.5 N.D. -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.3 +0.4 N.D. +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 +0.4 +0.0 N.D. +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 +0.7 +0.0 N.D. -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.7 +0.1 N.D. +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.5 +0.3 N.D. +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.7 +0.1 N.D. +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.9 +0.4 N.D. +0.0
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