Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02873 and EFB2_02874 are separated by 59 nucleotidesEFB2_02874 and EFB2_02875 are separated by 294 nucleotidesEFB2_02875 and EFB2_02876 are separated by 10 nucleotidesEFB2_02876 and EFB2_02877 overlap by 4 nucleotides EFB2_02873: EFB2_02873 - FhuE receptor, at 3,009,558 to 3,011,747 _02873 EFB2_02874: EFB2_02874 - PTS system glucose-specific EIICB component, at 3,011,807 to 3,013,240 _02874 EFB2_02875: EFB2_02875 - putative metal-dependent hydrolase YcfH, at 3,013,535 to 3,014,332 _02875 EFB2_02876: EFB2_02876 - DNA polymerase III subunit delta', at 3,014,343 to 3,015,347 _02876 EFB2_02877: EFB2_02877 - Thymidylate kinase, at 3,015,344 to 3,015,985 _02877
Group Condition EFB2_02873 EFB2_02874 EFB2_02875 EFB2_02876 EFB2_02877
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.6 -0.2 N.D. N.D.
no phage control BHIS_CaCl2 no phage control -0.1 -0.6 -0.1 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.5 -0.1 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.5 -0.0 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.6 -0.2 N.D. N.D.
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.6 -0.0 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.4 -0.2 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.4 -0.2 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.5 -0.0 N.D. N.D.
no phage control BHIS_CaCl2 no phage control -0.0 -0.5 -0.0 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.2 -0.3 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.5 -0.2 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.5 -0.1 N.D. N.D.
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 -0.5 -0.0 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.4 -0.0 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.6 +0.1 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.5 +0.1 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.4 -0.1 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.4 -0.0 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.4 -0.1 N.D. N.D.
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -0.5 +0.0 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.4 -0.0 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.6 +0.2 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.4 +0.0 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 -0.3 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.3 +0.0 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.5 +0.5 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.2 +0.3 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.1 +0.2 N.D. N.D.
no phage control BHIS_CaCl2 no phage control -0.0 +1.4 +0.2 N.D. N.D.
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