Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02866 and EFB2_02867 are separated by 398 nucleotidesEFB2_02867 and EFB2_02868 are separated by 22 nucleotidesEFB2_02868 and EFB2_02869 are separated by 10 nucleotidesEFB2_02869 and EFB2_02870 overlap by 20 nucleotides EFB2_02866: EFB2_02866 - NADH dehydrogenase, at 3,003,720 to 3,005,024 _02866 EFB2_02867: EFB2_02867 - hypothetical protein, at 3,005,423 to 3,005,965 _02867 EFB2_02868: EFB2_02868 - Beta-hexosaminidase, at 3,005,988 to 3,007,013 _02868 EFB2_02869: EFB2_02869 - Thiamine kinase, at 3,007,024 to 3,007,848 _02869 EFB2_02870: EFB2_02870 - Penicillin-binding protein activator LpoB, at 3,007,829 to 3,008,470 _02870
Group Condition EFB2_02866 EFB2_02867 EFB2_02868 EFB2_02869 EFB2_02870
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -0.1 -0.1 -0.1 -0.5
no phage control BHIS_CaCl2 no phage control +0.1 -1.0 +0.2 +0.3 -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.0 +0.2 -0.1 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 +0.2 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.0 +0.3 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.2 -0.2 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.4 +0.3 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.3 +0.1 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.2 +0.0 -0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community -0.0 +0.2 +0.1 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.1 +0.0 +0.3 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.2 -0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.2 +0.2 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 -0.3 -0.1 +0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.3 +0.4 -0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.0 +0.2 +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.1 -0.0 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.2 +0.4 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.2 +0.1 +0.2 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.2 +0.3 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.1 +0.3 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 +0.3 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 +0.3 +0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 +0.3 +0.2 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 +0.2 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.3 +0.1 -0.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.3 +0.2 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.0 +0.3 +0.4 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 +0.3 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.4 +0.3 -0.1 +0.5
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