Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02805 and EFB2_02806 are separated by 31 nucleotidesEFB2_02806 and EFB2_02807 overlap by 4 nucleotidesEFB2_02807 and EFB2_02808 overlap by 1 nucleotidesEFB2_02808 and EFB2_02809 are separated by 588 nucleotides EFB2_02805: EFB2_02805 - hypothetical protein, at 2,956,363 to 2,956,656 _02805 EFB2_02806: EFB2_02806 - hypothetical protein, at 2,956,688 to 2,957,149 _02806 EFB2_02807: EFB2_02807 - Lysozyme RrrD, at 2,957,146 to 2,957,643 _02807 EFB2_02808: EFB2_02808 - hypothetical protein, at 2,957,643 to 2,957,858 _02808 EFB2_02809: EFB2_02809 - Outer membrane porin protein OmpD, at 2,958,447 to 2,959,529 _02809
Group Condition EFB2_02805 EFB2_02806 EFB2_02807 EFB2_02808 EFB2_02809
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 -0.2 -0.3 -0.3 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 -0.1 -0.2 -0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.0 -0.3 +0.0 -0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.5 -0.1 -0.0 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.5 -0.2 -0.1 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.6 +0.0 -0.1 +0.0 +0.0
no phage control BHIS no phage control -0.3 -0.1 +0.1 -0.2 -0.0
no phage control BHIS no phage control -0.4 +0.0 +0.1 -0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.2 -0.3 +0.1 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.2 -0.2 -0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.2 -0.2 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.3 -0.1 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.2 +0.2 +0.1 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.0 +0.1 -0.4
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 +0.0 -0.2 +0.4 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.2 -0.1 +0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.5 +0.3 +0.1 +0.4 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.3 -0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.2 +0.2 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.3 +0.1 +0.1 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 +0.2 -0.2 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -0.0 +0.2 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.3 +0.1 -0.0 +0.2 -0.2
no phage control BHIS_CaCl2 no phage control -0.0 +0.7 -0.3 +0.5 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.3 -0.0 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.4 +0.3 -0.0 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.5 +0.3 -0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.4 +0.0 +0.0 +0.4 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 +0.1 +0.2 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.5 +0.4 -0.2 +0.1 -0.1
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