Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02766 and EFB2_02767 are separated by 510 nucleotidesEFB2_02767 and EFB2_02768 are separated by 112 nucleotidesEFB2_02768 and EFB2_02769 are separated by 343 nucleotidesEFB2_02769 and EFB2_02770 are separated by 313 nucleotides EFB2_02766: EFB2_02766 - putative cyclic di-GMP phosphodiesterase PdeG, at 2,921,549 to 2,922,229 _02766 EFB2_02767: EFB2_02767 - putative protein YmgC, at 2,922,740 to 2,922,988 _02767 EFB2_02768: EFB2_02768 - putative two-component-system connector protein AriR, at 2,923,101 to 2,923,367 _02768 EFB2_02769: EFB2_02769 - putative two-component-system connector protein YcgZ, at 2,923,711 to 2,923,947 _02769 EFB2_02770: EFB2_02770 - Blue light- and temperature-regulated antirepressor BluF, at 2,924,261 to 2,925,472 _02770
Group Condition EFB2_02766 EFB2_02767 EFB2_02768 EFB2_02769 EFB2_02770
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.5 -3.2 -0.9 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 -1.5 -1.2 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.3 -2.5 -0.3 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.4 -1.1 -1.7 -0.8 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 -2.2 -0.5 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.9 -1.8 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.0 -0.6 -1.0 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 -0.3 -2.1 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -2.7 +0.1 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.6 +0.0 +0.2 -1.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -1.2 -0.6 -0.6 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 -0.6 -1.0 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 -0.0 -1.3 -0.8 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 -1.5 -0.0 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -1.0 -0.7 +0.0 -0.2
no phage control BHIS_CaCl2 no phage control -0.2 +0.4 -0.8 -1.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -1.3 +0.2 -0.4 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.4 -1.4 -0.7 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -1.4 +0.5 -0.9 +0.2
mixed community no phage control BHIS no phage control with 14 member community +0.2 -1.1 -1.0 +0.3 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.5 -1.1 -1.0 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.8 -0.5 +0.4 -0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.6 -0.7 -0.9 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.2 +1.0 -1.6 -0.4 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.6 -1.1 +0.1 -0.2 -0.0
no phage control BHIS no phage control +0.2 -1.1 +0.6 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.8 -1.2 -0.0 +0.4 -0.2
no phage control BHIS_CaCl2 no phage control -0.3 -0.1 +1.0 -1.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.8 +0.4 -0.7 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.6 +1.2 +0.2 +0.1 +0.1
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