Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02737 and EFB2_02738 are separated by 199 nucleotidesEFB2_02738 and EFB2_02739 are separated by 1 nucleotidesEFB2_02739 and EFB2_02740 are separated by 99 nucleotidesEFB2_02740 and EFB2_02741 are separated by 94 nucleotides EFB2_02737: EFB2_02737 - hypothetical protein, at 2,897,396 to 2,897,650 _02737 EFB2_02738: EFB2_02738 - Flagellar brake protein YcgR, at 2,897,850 to 2,898,584 _02738 EFB2_02739: EFB2_02739 - Endo-type membrane-bound lytic murein transglycosylase A, at 2,898,586 to 2,899,197 _02739 EFB2_02740: EFB2_02740 - Murein tetrapeptide carboxypeptidase, at 2,899,297 to 2,900,211 _02740 EFB2_02741: EFB2_02741 - K(+)/H(+) antiporter NhaP2, at 2,900,306 to 2,902,042 _02741
Group Condition EFB2_02737 EFB2_02738 EFB2_02739 EFB2_02740 EFB2_02741
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.5 -0.2 -0.2 -1.5 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.7 +0.1 -0.1 -1.3 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 -0.0 +0.1 -1.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.4 -0.1 +0.3 -1.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.0 -0.2 -1.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 -0.0 +0.3 -0.9 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 +0.1 -0.1 -1.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.0 -0.0 -1.4 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.2 +0.3 -1.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.9 +0.1 +0.3 -0.6 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.0 +0.2 -1.0 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.4 -0.2 +0.1 -0.6 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 +0.0 +0.2 -0.8 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 +0.2 +0.2 -1.2 +0.0
no phage control BHIS_CaCl2 no phage control -0.7 -0.3 -0.5 +0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.3 +0.1 +0.1 -1.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 +0.1 -1.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.5 +0.1 +0.2 -0.7 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.5 +0.3 -0.1 -0.7 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 -0.0 +0.2 -1.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.0 +0.2 -1.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 +0.2 -1.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.0 +0.1 -0.7 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.1 +0.2 -0.7 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.6 +0.1 +0.3 -0.8 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.2 +0.3 -1.0 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.5 +0.1 +0.1 -0.6 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.5 +0.2 +0.2 -0.7 +0.2
mixed community no phage control BHIS no phage control with 14 member community +0.5 -0.3 +0.3 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.6 -0.0 +0.5 +0.4 -0.2
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