Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02709 and EFB2_02710 are separated by 269 nucleotidesEFB2_02710 and EFB2_02711 are separated by 405 nucleotidesEFB2_02711 and EFB2_02712 are separated by 147 nucleotidesEFB2_02712 and EFB2_02713 are separated by 35 nucleotides EFB2_02709: EFB2_02709 - Putative cation transport regulator ChaB, at 2,868,315 to 2,868,545 _02709 EFB2_02710: EFB2_02710 - Sodium-potassium/proton antiporter ChaA, at 2,868,815 to 2,869,915 _02710 EFB2_02711: EFB2_02711 - Small toxic polypeptide LdrA, at 2,870,321 to 2,870,428 _02711 EFB2_02712: EFB2_02712 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 2,870,576 to 2,871,430 _02712 EFB2_02713: EFB2_02713 - hypothetical protein, at 2,871,466 to 2,872,275 _02713
Group Condition EFB2_02709 EFB2_02710 EFB2_02711 EFB2_02712 EFB2_02713
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 +0.2 -1.5 N.D. -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.1 -1.3 N.D. +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.3 -1.6 N.D. +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.0 -1.5 N.D. +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.2 -1.1 N.D. +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.1 -1.2 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.3 -1.0 N.D. +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 -0.1 -1.0 N.D. +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.0 -0.8 N.D. +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.0 -0.9 N.D. +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.0 -0.9 N.D. -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.1 -0.7 N.D. +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.1 -0.7 N.D. +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.0 -0.6 N.D. +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.1 -0.8 N.D. +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.3 +0.1 -0.5 N.D. +0.4
mixed community no phage control BHIS no phage control with 14 member community -0.5 +0.3 +0.0 N.D. +0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.0 +0.6 N.D. +0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.2 +0.6 N.D. +0.4
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.3 -0.1 +0.4 N.D. +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.3 +0.3 N.D. +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.2 +0.9 N.D. +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.2 +0.5 N.D. +0.3
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.0 +0.9 N.D. +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.4 +0.1 +0.7 N.D. -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 +0.0 +0.7 N.D. +0.4
no phage control BHIS_CaCl2 no phage control +0.0 +0.5 +1.8 N.D. -1.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.1 +0.9 N.D. +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.1 +0.7 N.D. +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.5 +0.3 N.D. +0.6
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