Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02707 and EFB2_02708 are separated by 43 nucleotidesEFB2_02708 and EFB2_02709 are separated by 136 nucleotidesEFB2_02709 and EFB2_02710 are separated by 269 nucleotidesEFB2_02710 and EFB2_02711 are separated by 405 nucleotides EFB2_02707: EFB2_02707 - Protein YchN, at 2,867,065 to 2,867,418 _02707 EFB2_02708: EFB2_02708 - Glutathione-specific gamma-glutamylcyclotransferase, at 2,867,462 to 2,868,178 _02708 EFB2_02709: EFB2_02709 - Putative cation transport regulator ChaB, at 2,868,315 to 2,868,545 _02709 EFB2_02710: EFB2_02710 - Sodium-potassium/proton antiporter ChaA, at 2,868,815 to 2,869,915 _02710 EFB2_02711: EFB2_02711 - Small toxic polypeptide LdrA, at 2,870,321 to 2,870,428 _02711
Group Condition EFB2_02707 EFB2_02708 EFB2_02709 EFB2_02710 EFB2_02711
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.1 -0.6 -0.1 -0.3 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.6 -0.2 +0.1 +0.0 -1.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.7 +0.0 -0.1 -1.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 -0.1 +0.3 -0.3 -1.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.1 -0.2 +0.3 -1.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.7 -0.4 -0.2 -0.2 +0.3
mixed community no phage control BHIS no phage control with 14 member community -0.2 -0.3 +0.1 -0.1 -0.6
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.4 +0.2 -0.0 -0.1 -0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.0 +0.0 -0.2 -1.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.4 -0.0 -0.1 -0.1 -1.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 +0.4 +0.2 +0.1 -1.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.1 -0.0 +0.2 -1.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 +0.3 -0.2 +0.0 -0.8
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.1 -0.0 -0.1 -0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 +0.1 +0.1 +0.1 -0.8
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.1 -0.1 -0.2 +0.3 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.3 +0.2 +0.0 +0.0 -0.9
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 +0.2 +0.2 -0.0 -0.9
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 +0.2 +0.3 +0.2 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.5 -0.2 +0.3 +0.1 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.5 +0.0 -0.0 +0.0 +0.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.4 +0.0 +0.2 +0.2 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.6 +0.4 -0.3 +0.3 -0.4
no phage control BHIS no phage control -0.4 +0.3 +0.2 +0.2 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.2 -0.0 +0.5 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -0.2 +0.3 +0.1 +0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.3 +0.4 +0.1 +0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 +0.2 -0.1 +0.9
no phage control BHIS_CaCl2 no phage control -1.5 +0.5 +0.0 +0.5 +1.8
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +1.2 -0.1 +0.0 -0.2 +0.9
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