Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02688 and EFB2_02689 are separated by 603 nucleotidesEFB2_02689 and EFB2_02690 are separated by 143 nucleotidesEFB2_02690 and EFB2_02691 are separated by 201 nucleotidesEFB2_02691 and EFB2_02692 are separated by 91 nucleotides EFB2_02688: EFB2_02688 - Thymidine kinase, at 2,845,855 to 2,846,472 _02688 EFB2_02689: EFB2_02689 - DNA-binding protein H-NS, at 2,847,076 to 2,847,489 _02689 EFB2_02690: EFB2_02690 - UTP--glucose-1-phosphate uridylyltransferase, at 2,847,633 to 2,848,541 _02690 EFB2_02691: EFB2_02691 - Regulator of RpoS, at 2,848,743 to 2,849,756 _02691 EFB2_02692: EFB2_02692 - putative NTE family protein, at 2,849,848 to 2,850,792 _02692
Group Condition EFB2_02688 EFB2_02689 EFB2_02690 EFB2_02691 EFB2_02692
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -3.7 N.D. -0.4 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -1.8 N.D. -0.9 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -2.5 N.D. -0.6 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -2.2 N.D. -0.5 -0.3
mixed community no phage control BHIS no phage control with 14 member community +0.3 -2.5 N.D. -0.6 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -2.3 N.D. -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -2.4 N.D. -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -1.6 N.D. -1.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -1.6 N.D. -0.5 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -1.9 N.D. +0.0 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -1.5 N.D. -0.9 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -1.4 N.D. -0.8 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -1.7 N.D. -0.3 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -1.6 N.D. -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.8 N.D. -0.8 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -1.4 N.D. -0.4 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -1.2 N.D. -0.7 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.5 N.D. -0.9 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.8 N.D. -0.4 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -1.3 N.D. -0.4 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.7 N.D. -0.6 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -1.4 N.D. +0.4 -0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -1.3 N.D. -0.4 +0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -1.0 N.D. -0.4 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.2 N.D. -0.8 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -1.0 N.D. -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.7 N.D. -0.7 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.3 N.D. -1.0 -0.2
no phage control BHIS_CaCl2 no phage control +1.0 -0.7 N.D. -1.3 +0.2
no phage control BHIS no phage control +0.4 -0.4 N.D. -0.5 +0.2
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EFB2_02688
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EFB2_02692
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