Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02684 and EFB2_02685 are separated by 26 nucleotidesEFB2_02685 and EFB2_02686 are separated by 476 nucleotidesEFB2_02686 and EFB2_02687 are separated by 125 nucleotidesEFB2_02687 and EFB2_02688 are separated by 126 nucleotides EFB2_02684: EFB2_02684 - hypothetical protein, at 2,840,416 to 2,840,571 _02684 EFB2_02685: EFB2_02685 - hypothetical protein, at 2,840,598 to 2,841,245 _02685 EFB2_02686: EFB2_02686 - Aldehyde-alcohol dehydrogenase, at 2,841,722 to 2,844,397 _02686 EFB2_02687: EFB2_02687 - hypothetical protein, at 2,844,523 to 2,845,728 _02687 EFB2_02688: EFB2_02688 - Thymidine kinase, at 2,845,855 to 2,846,472 _02688
Group Condition EFB2_02684 EFB2_02685 EFB2_02686 EFB2_02687 EFB2_02688
mixed community no phage control BHIS no phage control with 14 member community -2.3 +0.3 -3.7 +0.3 +0.3
mixed community no phage control BHIS no phage control with 14 member community -0.9 -0.0 -3.9 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.6 +0.1 -3.6 +0.4 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 -0.0 -3.8 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.1 -3.8 -0.3 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.4 -0.1 -3.7 +0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.9 +0.0 -3.2 +0.3 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.4 -0.2 -3.5 +0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.5 -0.2 -3.9 -0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.0 -3.9 -0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 +0.2 -3.5 +0.2 +0.3
no phage control BHIS no phage control +0.2 +0.0 -3.6 -0.2 +0.4
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.5 -0.3 -3.7 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.6 +0.3 -3.7 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +1.1 -0.1 -3.7 -0.4 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.7 -0.1 -3.6 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 +0.2 -3.7 +0.3 +0.1
no phage control BHIS no phage control +0.9 +0.1 -3.6 +0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.8 +0.2 -3.6 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.8 +0.1 -3.6 +0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.9 +0.1 -3.5 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.9 +0.1 -3.8 +0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.8 +0.2 -3.3 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +1.0 -0.1 -3.7 +0.4 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.8 +0.2 -3.6 +0.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.9 -0.0 -3.5 +0.5 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +1.6 +0.2 -3.6 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +1.1 +0.2 -3.0 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +1.1 -0.0 -3.5 +0.6 +0.1
no phage control BHIS_CaCl2 no phage control +0.6 +0.5 -2.5 +0.1 +1.0
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