Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02678 and EFB2_02679 overlap by 4 nucleotidesEFB2_02679 and EFB2_02680 are separated by 11 nucleotidesEFB2_02680 and EFB2_02681 are separated by 14 nucleotidesEFB2_02681 and EFB2_02682 are separated by 85 nucleotides EFB2_02678: EFB2_02678 - Vitamin B12 import ATP-binding protein BtuD, at 2,834,274 to 2,835,278 _02678 EFB2_02679: EFB2_02679 - Oligopeptide transport ATP-binding protein OppD, at 2,835,275 to 2,836,288 _02679 EFB2_02680: EFB2_02680 - Oligopeptide transport system permease protein OppC, at 2,836,300 to 2,837,208 _02680 EFB2_02681: EFB2_02681 - Oligopeptide transport system permease protein OppB, at 2,837,223 to 2,838,143 _02681 EFB2_02682: EFB2_02682 - Periplasmic oligopeptide-binding protein, at 2,838,229 to 2,839,905 _02682
Group Condition EFB2_02678 EFB2_02679 EFB2_02680 EFB2_02681 EFB2_02682
no phage control BHIS_CaCl2 no phage control -0.3 -0.5 -0.5 +0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.0 -0.2 -0.4 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.4 +0.2 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.3 +0.1 +0.2 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.1 -0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.1 -0.3 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.2 -0.1 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.2 -0.3 +0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.2 +0.2 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 +0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.3 +0.1 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.1 +0.2 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.3 +0.2 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.1 +0.3 +0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.1 +0.0 +0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.2 +0.2 +0.1 +0.0 +0.0
mixed community no phage control BHIS no phage control with 14 member community -0.1 +0.2 +0.3 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.5 -0.2 -0.0 +0.1
no phage control BHIS no phage control -0.1 +0.2 +0.2 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 +0.5 -0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.3 -0.2 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 -0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.2 +0.2 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.1 +0.3 +0.1 +0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.2 +0.1 +0.2 +0.1 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 +0.1 +0.1 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.3 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 +0.1 -0.0 +0.2
no phage control BHIS_CaCl2 no phage control +0.2 +0.2 +0.2 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.1 +0.3 +0.3 +0.2
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EFB2_02678
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