Fitness for 5 genes in Escherichia fergusonii Becca

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	EFB2_02645	EFB2_02646	EFB2_02647	EFB2_02648	EFB2_02649
no phage control	BHIS_CaCl2 no phage control	N.D.	-3.6	+0.4	N.D.	-0.4
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	-1.1	+0.0	N.D.	-0.0
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	-0.4	-0.1	N.D.	-0.2
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	-0.6	+0.2	N.D.	-0.3
no phage control	BHIS no phage control	N.D.	-0.6	-0.0	N.D.	-0.0
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	N.D.	-0.1	-0.3	N.D.	-0.1
mixed community no phage control	BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae	N.D.	-0.6	+0.1	N.D.	-0.1
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	N.D.	-0.3	-0.1	N.D.	+0.0
mixed community no phage control	BHIS_CaCl2 no phage control with 14 member community	N.D.	-0.4	-0.1	N.D.	+0.1
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	-0.5	-0.0	N.D.	+0.2
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	N.D.	-0.4	+0.3	N.D.	-0.1
phage monoculture	BHIS_CaCl2 with hk phage cocktail 1 MOI	N.D.	-0.4	+0.1	N.D.	+0.1
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	N.D.	-0.5	+0.2	N.D.	+0.1
mixed community no phage control	BHIS no phage control with 14 member community plus Klebsiella pneumoniae	N.D.	-0.2	-0.1	N.D.	+0.2
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	N.D.	-0.2	-0.1	N.D.	+0.2
mixed community no phage control	BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae	N.D.	-0.3	+0.3	N.D.	-0.1
mixed community no phage control	BHIS no phage control with 14 member community	N.D.	-0.4	+0.3	N.D.	+0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	N.D.	-0.3	+0.3	N.D.	+0.0
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae	N.D.	+0.3	-0.1	N.D.	-0.2
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	-0.4	+0.5	N.D.	-0.0
mixed community no phage control	BHIS_CaCl2 no phage control with 14 member community	N.D.	+0.4	-0.3	N.D.	-0.0
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	N.D.	+0.4	-0.1	N.D.	-0.0
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; 14 member community	N.D.	+0.4	-0.1	N.D.	-0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	N.D.	+0.2	+0.2	N.D.	-0.2
phage monoculture	BHIS_CaCl2 with hk phage cocktail 1 MOI	N.D.	+0.6	-0.0	N.D.	-0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	+0.4	+0.3	N.D.	-0.2
no phage control	BHIS_CaCl2 no phage control	N.D.	+0.4	+0.1	N.D.	-0.0
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	+0.6	+0.1	N.D.	-0.2
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	+0.0	+0.4	N.D.	+0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	+0.5	+0.0	N.D.	+0.1