Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02633 and EFB2_02634 overlap by 1 nucleotidesEFB2_02634 and EFB2_02635 are separated by 148 nucleotidesEFB2_02635 and EFB2_02636 are separated by 477 nucleotidesEFB2_02636 and EFB2_02637 are separated by 144 nucleotides EFB2_02633: EFB2_02633 - Multidrug resistance protein MexB, at 2,784,924 to 2,788,031 _02633 EFB2_02634: EFB2_02634 - Multidrug resistance protein MexA, at 2,788,031 to 2,789,152 _02634 EFB2_02635: EFB2_02635 - HTH-type transcriptional regulator BetI, at 2,789,301 to 2,789,867 _02635 EFB2_02636: EFB2_02636 - Enoyl-[acyl-carrier-protein] reductase [NADH] FabI, at 2,790,345 to 2,791,133 _02636 EFB2_02637: EFB2_02637 - hypothetical protein, at 2,791,278 to 2,792,405 _02637
Group Condition EFB2_02633 EFB2_02634 EFB2_02635 EFB2_02636 EFB2_02637
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.1 -0.1 N.D. -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 -0.1 N.D. -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 +0.2 N.D. -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.3 N.D. -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.2 -0.1 N.D. -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.1 -0.4 N.D. +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.2 N.D. -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.2 -0.1 N.D. -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.3 -0.0 N.D. -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 +0.2 -0.3 N.D. +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 +0.3 N.D. -0.2
no phage control BHIS no phage control +0.0 +0.1 -0.2 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.2 +0.3 N.D. -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 -0.0 N.D. -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.3 +0.0 N.D. -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.3 -0.2 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 +0.4 N.D. -0.1
no phage control BHIS_CaCl2 no phage control -0.1 +0.1 +0.3 N.D. -0.1
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.2 -0.1 N.D. +0.3
no phage control BHIS_CaCl2 no phage control +0.5 -0.1 +0.6 N.D. -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.0 -0.1 N.D. +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.2 +0.3 N.D. +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 +0.1 N.D. +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.0 +0.2 N.D. +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 +0.2 +0.3 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.2 +0.0 N.D. +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.3 -0.0 N.D. +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.0 +0.3 N.D. +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.2 N.D. +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.0 +0.3 N.D. +0.4
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