Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02616 and EFB2_02617 are separated by 20 nucleotidesEFB2_02617 and EFB2_02618 are separated by 13 nucleotidesEFB2_02618 and EFB2_02619 are separated by 209 nucleotidesEFB2_02619 and EFB2_02620 are separated by 74 nucleotides EFB2_02616: EFB2_02616 - Inner membrane ABC transporter permease protein YcjO, at 2,768,895 to 2,769,776 _02616 EFB2_02617: EFB2_02617 - hypothetical protein, at 2,769,797 to 2,771,089 _02617 EFB2_02618: EFB2_02618 - Glucosylglycerate phosphorylase, at 2,771,103 to 2,772,782 _02618 EFB2_02619: EFB2_02619 - Thiosulfate sulfurtransferase PspE, at 2,772,992 to 2,773,306 _02619 EFB2_02620: EFB2_02620 - Phage shock protein D, at 2,773,381 to 2,773,602 _02620
Group Condition EFB2_02616 EFB2_02617 EFB2_02618 EFB2_02619 EFB2_02620
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.1 +0.1 -0.7 -1.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.2 +0.2 -1.2
no phage control BHIS_CaCl2 no phage control +0.1 +0.1 +0.2 -0.1 -1.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 -0.4 -0.4 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.1 -0.1 -0.0 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 -0.3 -0.9 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 +0.1 +0.0 -0.7
mixed community no phage control BHIS no phage control with 14 member community +0.2 -0.1 -0.3 -0.5 +0.4
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.0 -0.2 -0.7 +0.6
no phage control BHIS no phage control +0.0 +0.0 -0.3 +0.3 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 +0.2 -0.0 -0.4 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.0 +0.1 -0.4 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.0 -0.3 +0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 -0.3 +0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.4 +0.2 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 +0.1 -0.5 +0.3 +0.4
mixed community no phage control BHIS no phage control with 14 member community +0.3 -0.1 -0.2 +0.4 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.0 -0.1 +0.5 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.1 +0.1 -0.3 +0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.2 +0.1 -0.7 +0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.1 -0.1 -0.1 +0.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.1 -0.0 -0.0 +0.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.0 +0.1 +0.6 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.1 +0.2 +0.3 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.3 +0.1 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -0.1 -0.2 +0.5 +0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.1 +0.6 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.2 +0.0 +0.4 +1.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.2 +0.2 +0.9 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.3 +0.2 -0.2 +0.4 +0.6
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