Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02591 and EFB2_02592 are separated by 512 nucleotidesEFB2_02592 and EFB2_02593 are separated by 194 nucleotidesEFB2_02593 and EFB2_02594 are separated by 151 nucleotidesEFB2_02594 and EFB2_02595 are separated by 49 nucleotides EFB2_02591: EFB2_02591 - HTH-type transcriptional regulator NimR, at 2,742,026 to 2,742,841 _02591 EFB2_02592: EFB2_02592 - Methylated-DNA--protein-cysteine methyltransferase, at 2,743,354 to 2,743,869 _02592 EFB2_02593: EFB2_02593 - Fumarate and nitrate reduction regulatory protein, at 2,744,064 to 2,744,816 _02593 EFB2_02594: EFB2_02594 - Universal stress protein E, at 2,744,968 to 2,745,918 _02594 EFB2_02595: EFB2_02595 - hypothetical protein, at 2,745,968 to 2,746,225 _02595
Group Condition EFB2_02591 EFB2_02592 EFB2_02593 EFB2_02594 EFB2_02595
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 -0.3 -2.7 -0.3 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.2 -0.1 -3.2 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.3 -0.3 -2.7 -0.3 -0.1
no phage control BHIS no phage control +0.1 -0.4 -2.9 -0.1 -0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.3 -3.2 -0.0 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.4 -3.2 +0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.4 -2.6 -0.2 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.4 -2.4 -0.6 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.2 -2.9 -0.4 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -2.8 -0.3 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.3 -2.8 -0.3 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.3 -3.1 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.4 -2.9 -0.4 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.4 -2.5 -0.4 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 -3.2 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.5 -2.3 -0.7 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 -2.8 -0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.3 -2.3 -1.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -3.2 +0.1 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 -3.0 +0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.3 -0.5 -2.6 -0.4 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -0.0 -3.1 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.1 -3.1 -0.2 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 -3.0 -0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.0 -3.0 +0.2 +0.5
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.1 -2.8 +0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 +0.1 -2.7 -0.3 +0.1
no phage control BHIS_CaCl2 no phage control +0.5 -1.2 -1.6 +0.2 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.4 -2.9 -0.3 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.2 -2.7 +0.5 +0.1
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