Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02586 and EFB2_02587 are separated by 254 nucleotidesEFB2_02587 and EFB2_02588 are separated by 20 nucleotidesEFB2_02588 and EFB2_02589 are separated by 194 nucleotidesEFB2_02589 and EFB2_02590 overlap by 1 nucleotides EFB2_02586: EFB2_02586 - Zinc transport protein ZntB, at 2,736,141 to 2,737,124 _02586 EFB2_02587: EFB2_02587 - Diguanylate cyclase DgcM, at 2,737,379 to 2,738,611 _02587 EFB2_02588: EFB2_02588 - putative DNA endonuclease SmrA, at 2,738,632 to 2,739,195 _02588 EFB2_02589: EFB2_02589 - Colistin resistance protein EmrB, at 2,739,390 to 2,740,901 _02589 EFB2_02590: EFB2_02590 - Colistin resistance protein EmrA, at 2,740,901 to 2,741,929 _02590
Group Condition EFB2_02586 EFB2_02587 EFB2_02588 EFB2_02589 EFB2_02590
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.2 -0.4 -0.5 -0.2
no phage control BHIS_CaCl2 no phage control -0.0 +0.1 -0.4 +0.2 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 +0.3 -0.3 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.2 -0.1 -0.3 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.0 +0.1 -0.4 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.1 -0.1 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 -0.3 +0.4 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.2 -0.4 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.1 -0.1 +0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community +0.0 +0.1 +0.3 -0.4 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.2 -0.3 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.1 -0.3 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.0 +0.4 -0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 +0.2 +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.1 -0.3 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.1 +0.1 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 -0.2 +0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.3 +0.4 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.4 +0.0 -0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 +0.1 +0.3 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.1 +0.1 -0.3 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -0.1 -0.1 +0.3 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.1 +0.1 -0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.1 +0.0 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.2 +0.1 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 +0.2 +0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.4 -0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 +0.4 +0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 -0.1 +0.2 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.2 -0.1 +0.3 +0.3 +0.1
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