Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02546 and EFB2_02547 are separated by 91 nucleotidesEFB2_02547 and EFB2_02548 are separated by 30 nucleotidesEFB2_02548 and EFB2_02549 are separated by 91 nucleotidesEFB2_02549 and EFB2_02550 are separated by 34 nucleotides EFB2_02546: EFB2_02546 - hypothetical protein, at 2,682,395 to 2,682,565 _02546 EFB2_02547: EFB2_02547 - 23S rRNA 5-hydroxycytidine synthase, at 2,682,657 to 2,684,660 _02547 EFB2_02548: EFB2_02548 - HTH-type transcriptional regulator SutR, at 2,684,691 to 2,685,227 _02548 EFB2_02549: EFB2_02549 - Inner membrane protein YdcO, at 2,685,319 to 2,686,491 _02549 EFB2_02550: EFB2_02550 - hypothetical protein, at 2,686,526 to 2,687,194 _02550
Group Condition EFB2_02546 EFB2_02547 EFB2_02548 EFB2_02549 EFB2_02550
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -3.8 +0.3 +0.4 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.6 +0.2 -0.2 +0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -1.5 +0.2 -0.1 -0.1 -0.0
no phage control BHIS_CaCl2 no phage control -0.8 -0.3 -0.4 +0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -1.3 +0.0 -0.0 +0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.8 +0.1 -0.0 -0.2 -0.3
no phage control BHIS no phage control -0.7 -0.1 -0.2 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.1 +0.0 +0.1 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.7 -0.3 +0.1 -0.1 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -1.0 -0.1 +0.2 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.8 -0.2 -0.2 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.6 +0.2 -0.2 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 -0.1 -0.1 -0.3 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.6 +0.1 -0.1 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.5 -0.3 +0.2 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.8 +0.0 +0.2 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.6 +0.1 +0.1 -0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.4 -0.1 -0.2 +0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.7 -0.1 +0.0 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 -0.1 +0.4 -0.3 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.6 +0.1 +0.4 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.6 +0.1 -0.3 +0.5 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.6 +0.1 +0.2 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +1.0 -0.3 +0.3 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community +1.1 -0.0 -0.3 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.6 +0.2 +0.2 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.6 -0.0 +0.3 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.6 +0.1 -0.0 +0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.8 +0.2 +0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +1.0 -0.0 +0.3 +0.1 +0.0
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