Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02531 and EFB2_02532 are separated by 13 nucleotidesEFB2_02532 and EFB2_02533 are separated by 266 nucleotidesEFB2_02533 and EFB2_02534 are separated by 112 nucleotidesEFB2_02534 and EFB2_02535 are separated by 241 nucleotides EFB2_02531: EFB2_02531 - hypothetical protein, at 2,666,633 to 2,667,043 _02531 EFB2_02532: EFB2_02532 - hypothetical protein, at 2,667,057 to 2,667,233 _02532 EFB2_02533: EFB2_02533 - L-asparagine permease 2, at 2,667,500 to 2,668,999 _02533 EFB2_02534: EFB2_02534 - putative protein YncE, at 2,669,112 to 2,670,173 _02534 EFB2_02535: EFB2_02535 - Metal-pseudopaline receptor CntO, at 2,670,415 to 2,672,517 _02535
Group Condition EFB2_02531 EFB2_02532 EFB2_02533 EFB2_02534 EFB2_02535
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -2.0 -0.0 +0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -1.9 -0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -2.0 +0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -1.3 -0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 -1.0 -0.1 +0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.4 -0.2 -0.3 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 -0.5 -0.2 -0.1 +0.1
no phage control BHIS no phage control +0.3 -1.3 +0.1 +0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.3 -1.0 -0.0 -0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.4 -0.9 -0.1 +0.0 -0.2
mixed community no phage control BHIS no phage control with 14 member community +0.3 -0.8 -0.1 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.6 +0.4 -0.4 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.7 +0.3 -0.0 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 -0.5 -0.2 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.7 -0.1 +0.4 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.7 -0.1 +0.2 +0.2
no phage control BHIS no phage control +0.6 -1.0 -0.0 +0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.3 +0.2 -0.2 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.4 +0.7 -0.1 -0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.5 +0.7 -0.2 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 +0.6 -0.0 +0.1 -0.0
no phage control BHIS_CaCl2 no phage control +0.9 -0.9 +0.3 +0.3 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.3 +0.8 -0.1 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.5 +1.1 -0.1 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.8 -0.0 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.8 -0.1 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 +0.8 +0.0 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 +0.8 -0.1 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 +1.7 -0.1 +0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 +1.0 -0.2 +0.3 +0.1
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