Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02514 and EFB2_02515 are separated by 95 nucleotidesEFB2_02515 and EFB2_02516 overlap by 1 nucleotidesEFB2_02516 and EFB2_02517 are separated by 228 nucleotidesEFB2_02517 and EFB2_02518 overlap by 8 nucleotides EFB2_02514: EFB2_02514 - hypothetical protein, at 2,646,429 to 2,646,599 _02514 EFB2_02515: EFB2_02515 - Endoribonuclease HigB, at 2,646,695 to 2,646,973 _02515 EFB2_02516: EFB2_02516 - putative HTH-type transcriptional regulator YddM, at 2,646,973 to 2,647,257 _02516 EFB2_02517: EFB2_02517 - Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit, at 2,647,486 to 2,648,139 _02517 EFB2_02518: EFB2_02518 - Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit, at 2,648,132 to 2,649,016 _02518
Group Condition EFB2_02514 EFB2_02515 EFB2_02516 EFB2_02517 EFB2_02518
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.3 N.D. -0.4 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.2 N.D. -0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.0 N.D. -0.4 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.2 N.D. -0.2 -0.2
no phage control BHIS_CaCl2 no phage control N.D. +0.2 N.D. -0.2 -0.5
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.1 N.D. -0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.0 N.D. -0.2 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. -0.1 N.D. -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.3 N.D. -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.4 N.D. -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.0 N.D. -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 N.D. -0.3 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.4 N.D. -0.2 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.1 N.D. -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.1 N.D. -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.2 N.D. -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.3 N.D. -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.3 N.D. -0.2 -0.2
no phage control BHIS no phage control N.D. +0.2 N.D. -0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.3 N.D. -0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 N.D. -0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 N.D. +0.2 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. +0.3 N.D. -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. +0.2 N.D. -0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community N.D. +0.3 N.D. -0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.3 N.D. -0.2 -0.0
mixed community no phage control BHIS no phage control with 14 member community N.D. +0.3 N.D. -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.3 N.D. -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.4 N.D. +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.4 N.D. +0.1 -0.2
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