Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02500 and EFB2_02501 are separated by 74 nucleotidesEFB2_02501 and EFB2_02502 are separated by 400 nucleotidesEFB2_02502 and EFB2_02503 are separated by 51 nucleotidesEFB2_02503 and EFB2_02504 are separated by 257 nucleotides EFB2_02500: EFB2_02500 - Two-component-system connector protein SafA, at 2,628,631 to 2,628,828 _02500 EFB2_02501: EFB2_02501 - HTH-type transcriptional regulator YdeO, at 2,628,903 to 2,629,664 _02501 EFB2_02502: EFB2_02502 - hypothetical protein, at 2,630,065 to 2,631,747 _02502 EFB2_02503: EFB2_02503 - Anaerobic sulfatase-maturating enzyme, at 2,631,799 to 2,632,956 _02503 EFB2_02504: EFB2_02504 - hypothetical protein, at 2,633,214 to 2,634,224 _02504
Group Condition EFB2_02500 EFB2_02501 EFB2_02502 EFB2_02503 EFB2_02504
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -1.1 +0.1 -1.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -1.9 -0.2 +0.2 -0.2
mixed community no phage control BHIS no phage control with 14 member community N.D. -1.4 +0.1 -0.3 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. -0.8 -0.0 -0.5 -0.4
no phage control BHIS no phage control N.D. -0.7 -0.5 -0.5 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.8 -0.1 -0.5 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.8 -0.4 -0.7 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -1.0 -0.0 -0.3 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.9 -0.0 -0.1 -0.4
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. -0.9 +0.0 -0.5 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.6 -0.0 -0.6 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.8 +0.1 -0.2 -0.4
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.9 -0.2 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -1.0 +0.0 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.6 -0.3 -0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.5 +0.1 -0.1 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. -0.8 +0.0 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.6 -0.3 -0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.8 -0.4 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.1 -0.2 -0.4 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. -1.0 +0.2 -0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.8 -0.0 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -1.2 +0.2 +0.2 -0.1
mixed community no phage control BHIS no phage control with 14 member community N.D. -0.5 +0.1 -0.3 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.6 -0.2 +0.2 -0.2
mixed community no phage control BHIS no phage control with 14 member community N.D. -0.5 -0.0 +0.2 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. +0.1 -0.1 +0.1 -0.8
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.5 +0.1 -0.6 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.5 -0.0 -0.4 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.3 -0.2 -0.4 +0.1
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