Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02492 and EFB2_02493 are separated by 527 nucleotidesEFB2_02493 and EFB2_02494 are separated by 361 nucleotidesEFB2_02494 and EFB2_02495 are separated by 41 nucleotidesEFB2_02495 and EFB2_02496 are separated by 13 nucleotides EFB2_02492: EFB2_02492 - hypothetical protein, at 2,618,753 to 2,618,875 _02492 EFB2_02493: EFB2_02493 - Type-1 fimbrial protein, A chain, at 2,619,403 to 2,619,966 _02493 EFB2_02494: EFB2_02494 - Chaperone protein FocC, at 2,620,328 to 2,621,038 _02494 EFB2_02495: EFB2_02495 - Outer membrane usher protein FimD, at 2,621,080 to 2,623,731 _02495 EFB2_02496: EFB2_02496 - Protein FimF, at 2,623,745 to 2,624,275 _02496
Group Condition EFB2_02492 EFB2_02493 EFB2_02494 EFB2_02495 EFB2_02496
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.2 -0.5 -0.3 -2.9
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.4 -0.1 -0.4 -0.8
no phage control BHIS_CaCl2 no phage control N.D. +0.6 -0.8 +0.0 -1.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.0 -0.3 -0.2 -0.7
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. +0.3 -0.4 -0.3 -0.9
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.2 -0.5 -0.4 -0.2
mixed community no phage control BHIS no phage control with 14 member community N.D. +0.2 -0.2 -0.0 -0.8
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.2 -0.6 -0.4 +0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.5 -1.0 +0.5 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.2 -0.4 +0.2 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.2 -1.3 +0.1 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. -0.4 -0.3 -0.2 +0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. +0.2 -0.3 -0.5 +0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. +0.3 -0.3 -0.4 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. -0.0 -0.5 -0.1 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.2 -0.3 +0.2 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. -0.2 -0.0 -0.4 +0.5
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. -0.1 -0.4 -0.1 +0.4
no phage control BHIS_CaCl2 no phage control N.D. +0.2 -0.6 +0.0 +0.3
no phage control BHIS_CaCl2 no phage control N.D. -0.0 -0.5 -0.1 +0.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. +0.4 -0.3 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.1 -0.7 -0.2 +1.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 -0.2 -0.3 +0.8
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. +0.1 -0.5 +0.2 +0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.0 -0.2 -0.3 +0.9
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. +0.1 -0.2 -0.1 +0.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.5 -0.2 -0.1 +0.8
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.0 +0.3 -0.2 +0.8
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.4 -0.4 -0.2 +1.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.5 +0.3 -0.0 +0.8
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