Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02437 and EFB2_02438 are separated by 138 nucleotidesEFB2_02438 and EFB2_02439 are separated by 226 nucleotidesEFB2_02439 and EFB2_02440 are separated by 196 nucleotidesEFB2_02440 and EFB2_02441 are separated by 3 nucleotides EFB2_02437: EFB2_02437 - hypothetical protein, at 2,577,763 to 2,578,122 _02437 EFB2_02438: EFB2_02438 - hypothetical protein, at 2,578,261 to 2,579,679 _02438 EFB2_02439: EFB2_02439 - Altronate oxidoreductase, at 2,579,906 to 2,581,357 _02439 EFB2_02440: EFB2_02440 - hypothetical protein, at 2,581,554 to 2,582,468 _02440 EFB2_02441: EFB2_02441 - Trans-aconitate 2-methyltransferase, at 2,582,472 to 2,583,230 _02441
Group Condition EFB2_02437 EFB2_02438 EFB2_02439 EFB2_02440 EFB2_02441
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.5 +0.1 -0.2 -1.2 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.6 -0.1 -0.2 -0.2 -0.8
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.5 +0.0 -0.6 -0.1 -0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 -0.2 -0.5 -1.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 -0.4 -0.7 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.0 -0.1 -0.0 -0.3 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 +0.1 -0.0 -0.5 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.2 -0.1 -0.2 -0.6 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.8 +0.1 -0.4 +0.4 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.0 -0.2 +0.1 -0.7
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.4 +0.0 -0.2 -0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.8 -0.0 -0.2 -0.3 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.5 +0.1 -0.2 -0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 +0.1 -0.4 +0.1 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 -0.3 -0.6 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.5 +0.1 -0.4 -0.7 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.9 +0.0 -0.1 -0.2 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.3 -0.1 -0.3 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.3 +0.2 -0.2 +0.1 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.3 -0.1 +0.1 -0.1 -0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.1 +0.4 -0.2 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.2 +0.2 +0.1 -0.9
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 -0.1 +0.2 +0.2 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.0 -0.1 +0.5 -0.5
no phage control BHIS_CaCl2 no phage control +0.4 +0.3 +0.3 -0.5 -0.6
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.4 +0.1 -0.1 +0.0 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.4 +0.1 -0.1 +0.3 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.4 -0.1 +0.2 +0.0 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 +0.2 -0.1 -0.3 +0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.7 +0.1 +0.3 -0.3 +0.6
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