Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02428 and EFB2_02429 are separated by 56 nucleotidesEFB2_02429 and EFB2_02430 are separated by 31 nucleotidesEFB2_02430 and EFB2_02431 are separated by 20 nucleotidesEFB2_02431 and EFB2_02432 are separated by 211 nucleotides EFB2_02428: EFB2_02428 - Aryl-phospho-beta-D-glucosidase BglA, at 2,569,388 to 2,570,827 _02428 EFB2_02429: EFB2_02429 - hypothetical protein, at 2,570,884 to 2,571,102 _02429 EFB2_02430: EFB2_02430 - Multiple antibiotic resistance protein MarA, at 2,571,134 to 2,571,517 _02430 EFB2_02431: EFB2_02431 - Multiple antibiotic resistance protein MarR, at 2,571,538 to 2,571,972 _02431 EFB2_02432: EFB2_02432 - hypothetical protein, at 2,572,184 to 2,572,849 _02432
Group Condition EFB2_02428 EFB2_02429 EFB2_02430 EFB2_02431 EFB2_02432
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.7 -0.4 -0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.8 -0.0 -0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 -0.3 -0.1 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 -0.2 -0.0 -0.3 -0.2
no phage control BHIS_CaCl2 no phage control +0.4 -0.3 -0.0 -1.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.2 -0.2 -0.2 -0.3 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.3 -0.5 +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 -0.4 -0.0 +0.3 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 -0.0 +0.3 -0.9
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 +0.5 -0.1 -0.8
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.6 -0.4 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.3 -0.2 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -1.0 +0.1 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.3 -0.4 -0.2 -0.4 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.2 -0.6 +0.2 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.3 -0.2 -0.5 +0.1
mixed community no phage control BHIS no phage control with 14 member community -0.3 +0.6 -0.4 +0.2 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.3 +0.1 -0.1 -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 +0.5 -0.6 +0.2 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.3 +0.3 -0.3 +0.5 -0.4
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.2 -0.4 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 +0.2 -0.2 +0.2 -0.2
no phage control BHIS no phage control -0.3 +0.1 -0.3 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 +0.4 +0.1 -0.3 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.4 +0.0 +0.4 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.5 +0.4 +0.2 -0.1 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.4 -0.1 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 +0.2 +0.4 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.6 -0.1 +0.3 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.8 -0.2 +0.6 +0.1
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