Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02416 and EFB2_02417 are separated by 88 nucleotidesEFB2_02417 and EFB2_02418 are separated by 136 nucleotidesEFB2_02418 and EFB2_02419 are separated by 507 nucleotidesEFB2_02419 and EFB2_02420 are separated by 218 nucleotides EFB2_02416: EFB2_02416 - HTH-type transcriptional repressor RspR, at 2,556,783 to 2,557,469 _02416 EFB2_02417: EFB2_02417 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 2,557,558 to 2,558,304 _02417 EFB2_02418: EFB2_02418 - Dipeptidyl carboxypeptidase, at 2,558,441 to 2,560,486 _02418 EFB2_02419: EFB2_02419 - Diguanylate cyclase DgcZ, at 2,560,994 to 2,561,884 _02419 EFB2_02420: EFB2_02420 - Small protein MgtS, at 2,562,103 to 2,562,198 _02420
Group Condition EFB2_02416 EFB2_02417 EFB2_02418 EFB2_02419 EFB2_02420
no phage control BHIS no phage control +0.2 +0.1 -0.0 -0.1 -5.0
mixed community no phage control BHIS no phage control with 14 member community -1.3 +0.0 +0.1 -0.2 -3.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.1 -0.1 -3.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.0 -0.3 -0.1 -1.7
mixed community no phage control BHIS no phage control with 14 member community -0.9 -0.1 +0.1 +0.0 -1.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.6 +0.0 +0.0 -0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.8 -0.0 +0.2 -0.4 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.8 -0.1 -0.1 +0.0 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.5 -0.3 +0.2 +0.1 -1.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.6 +0.1 -0.1 -0.2 -1.8
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.5 -0.0 -0.1 +0.2 -0.9
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.4 -0.2 +0.0 -0.2 -1.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -1.3 -0.1 +0.1 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -0.1 -0.1 -0.3 -0.8
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.8 -0.0 +0.1 +0.0 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.0 -0.1 +0.0 -1.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 -0.1 -0.2 +0.1 +0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.1 +0.0 -0.0 -0.1 +1.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.9 +0.2 +0.1 -0.2 +0.9
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.7 -0.1 +0.1 -0.3 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.1 -0.3 +0.1 +0.8
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.1 +0.0 -0.3 +0.8
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.5 -0.2 +0.2 -0.2 +0.6
no phage control BHIS_CaCl2 no phage control -0.2 +0.1 +0.6 +0.4 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.1 -0.2 -0.1 +1.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.5 +0.3 -0.2 -0.0 +0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 -0.2 +0.1 +1.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.7 -0.1 +0.1 -0.0 +0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.2 +0.0 +0.9
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.4 +0.2 +0.1 +0.1 +0.9
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EFB2_02416
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