Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02410 and EFB2_02411 are separated by 205 nucleotidesEFB2_02411 and EFB2_02412 are separated by 11 nucleotidesEFB2_02412 and EFB2_02413 are separated by 57 nucleotidesEFB2_02413 and EFB2_02414 are separated by 88 nucleotides EFB2_02410: EFB2_02410 - hypothetical protein, at 2,550,616 to 2,550,942 _02410 EFB2_02411: EFB2_02411 - D-galactonate dehydratase family member RspA, at 2,551,148 to 2,552,362 _02411 EFB2_02412: EFB2_02412 - Starvation-sensing protein RspB, at 2,552,374 to 2,553,393 _02412 EFB2_02413: EFB2_02413 - Putative transporter YdfJ, at 2,553,451 to 2,554,818 _02413 EFB2_02414: EFB2_02414 - Polyol:NADP oxidoreductase, at 2,554,907 to 2,556,367 _02414
Group Condition EFB2_02410 EFB2_02411 EFB2_02412 EFB2_02413 EFB2_02414
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.8 +0.1 -0.2 -0.3 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.6 +0.1 -0.3 -0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 -0.4 -0.3 -0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.2 +0.0 +0.1 +0.1 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.7 -0.1 -0.3 +0.2 -0.4
no phage control BHIS_CaCl2 no phage control -0.6 -0.1 -0.4 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 +0.0 -0.6 -0.3 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.9 -0.0 -0.2 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 -0.2 -0.2 +0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -1.3 -0.0 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.0 -0.0 -0.4 +0.2 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.4 -0.1 -0.1 -0.3 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.6 +0.1 -0.1 +0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.5 -0.3 -0.1 +0.4 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.5 -0.1 -0.5 -0.3 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.1 -0.0 +0.4 +0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.6 +0.1 +0.1 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.6 -0.2 +0.1 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.0 +0.2 -0.1 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 +0.1 -0.3 +0.0 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.8 +0.2 -0.4 +0.3 +0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.4 -0.2 +0.1 -0.2 -0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -0.1 -0.2 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.1 -0.3 +0.3 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.5 +0.0 -0.3 -0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.4 -0.4 +0.2 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.7 -0.3 -0.3 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.9 -0.1 -0.1 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.6 -0.2 -0.2 +0.3 +0.1
no phage control BHIS_CaCl2 no phage control +0.7 -0.2 +0.7 -0.1 +0.6
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