Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02387 and EFB2_02388 are separated by 185 nucleotidesEFB2_02388 and EFB2_02389 are separated by 523 nucleotidesEFB2_02389 and EFB2_02390 are separated by 10 nucleotidesEFB2_02390 and EFB2_02391 are separated by 24 nucleotides EFB2_02387: EFB2_02387 - Putative arginine/ornithine antiporter, at 2,525,347 to 2,526,729 _02387 EFB2_02388: EFB2_02388 - Protein YdgH, at 2,526,915 to 2,527,859 _02388 EFB2_02389: EFB2_02389 - NAD(P) transhydrogenase subunit alpha, at 2,528,383 to 2,529,915 _02389 EFB2_02390: EFB2_02390 - NAD(P) transhydrogenase subunit beta, at 2,529,926 to 2,531,314 _02390 EFB2_02391: EFB2_02391 - AI-2 transport protein TqsA, at 2,531,339 to 2,532,373 _02391
Group Condition EFB2_02387 EFB2_02388 EFB2_02389 EFB2_02390 EFB2_02391
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 -0.4 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.4 -0.0 -0.3 -0.2 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.1 -0.2 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.2 +0.3 -0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.2 +0.2 +0.0 -0.2
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.3 -0.3 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -0.3 +0.5 -0.3 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.4 +0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.0 -0.3 -0.2 +0.2 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.1 -0.2 +0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.3 -0.5 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.2 +0.2 +0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.4 -0.3 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.1 +0.2 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.3 -0.1 +0.2 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.3 -0.2 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -0.2 +0.1 +0.3 -0.2
no phage control BHIS no phage control +0.1 +0.1 -0.2 +0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.5 -0.0 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 -0.0 +0.4 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.3 -0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.2 +0.3 +0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.1 +0.4 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.2 +0.2 +0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.4 -0.1 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 -0.0 +0.3 +0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.4 +0.3 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.1 +0.1 +0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 +0.2 +0.2 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.1 +0.2 +0.3 +0.2
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