Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02377 and EFB2_02378 are separated by 44 nucleotidesEFB2_02378 and EFB2_02379 are separated by 100 nucleotidesEFB2_02379 and EFB2_02380 are separated by 198 nucleotidesEFB2_02380 and EFB2_02381 are separated by 142 nucleotides EFB2_02377: EFB2_02377 - Membrane-associated protein UidC, at 2,513,616 to 2,514,881 _02377 EFB2_02378: EFB2_02378 - Protein YdgA, at 2,514,926 to 2,516,434 _02378 EFB2_02379: EFB2_02379 - Mannose-6-phosphate isomerase, at 2,516,535 to 2,517,710 _02379 EFB2_02380: EFB2_02380 - Fumarate hydratase class I, aerobic, at 2,517,909 to 2,519,555 _02380 EFB2_02381: EFB2_02381 - Fumarate hydratase class II, at 2,519,698 to 2,521,101 _02381
Group Condition EFB2_02377 EFB2_02378 EFB2_02379 EFB2_02380 EFB2_02381
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 -0.7 -0.4 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.0 -0.9 -0.7 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.3 -0.4 -0.2 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.6 -0.2 -0.2 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.4 -0.5 -0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.2 -0.7 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.4 -0.0 -0.4 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.2 -0.4 -0.4 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.3 -0.5 -0.2 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.0 -0.7 -0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.3 -0.1 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 +0.1 -0.5 -0.4 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.1 +0.0 -0.2 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.6 -0.6 -0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -0.3 -0.3 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.3 -0.2 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 -0.1 -0.5 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.2 -0.2 -0.2 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.2 -0.5 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.3 -0.3 -0.5 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.3 -0.8 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.3 -0.6 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.2 -0.2 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.4 -0.2 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 -0.7 -0.0 +0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.2 +0.2 -0.6 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.1 -0.4 -0.2 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.4 +0.2 -0.5 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.0 -0.5 +0.1 +0.3
no phage control BHIS_CaCl2 no phage control +0.0 +0.7 -0.6 -0.0 +0.2
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