Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02365 and EFB2_02366 are separated by 76 nucleotidesEFB2_02366 and EFB2_02367 are separated by 85 nucleotidesEFB2_02367 and EFB2_02368 are separated by 640 nucleotidesEFB2_02368 and EFB2_02369 are separated by 35 nucleotides EFB2_02365: EFB2_02365 - Ion-translocating oxidoreductase complex subunit A, at 2,500,110 to 2,500,691 _02365 EFB2_02366: EFB2_02366 - Inner membrane protein YdgK, at 2,500,768 to 2,501,208 _02366 EFB2_02367: EFB2_02367 - OriC-binding nucleoid-associated protein, at 2,501,294 to 2,501,509 _02367 EFB2_02368: EFB2_02368 - putative oxidoreductase YdgJ, at 2,502,150 to 2,503,190 _02368 EFB2_02369: EFB2_02369 - Adenosine deaminase, at 2,503,226 to 2,504,227 _02369
Group Condition EFB2_02365 EFB2_02366 EFB2_02367 EFB2_02368 EFB2_02369
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.8 +0.1 -0.5 -0.2 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.3 -0.7 +0.0 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.1 -0.1 -0.3 +0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.1 +0.2 -0.5 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.1 +0.4 -0.7 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.1 +0.3 -0.4 +0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.0 -0.4 -0.2 -0.2 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.8 -0.3 +0.1 +0.1 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -1.0 -0.1 -0.3 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 +0.1 -0.4 +0.2 -0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.0 -0.2 -0.5 +0.1 +0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.1 -0.6 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.7 -0.1 -0.5 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -1.3 +0.2 -0.1 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.6 +0.0 -0.4 +0.2 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.2 -0.0 +0.1 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.9 +0.3 -0.1 +0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.0 +0.2 -0.1 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.9 +0.1 -0.4 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 -0.3 -0.3 -0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.2 +0.2 +0.0 +0.0 +0.1
no phage control BHIS_CaCl2 no phage control -0.7 -0.1 +0.0 -0.2 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 +0.0 -0.6 +0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.9 +0.3 +0.3 -0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.4 +0.2 -0.4 +0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community -0.2 +0.1 -0.8 +0.3 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -0.0 +0.3 -0.5 +0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.8 +0.1 +0.4 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 +0.2 -0.5 +0.2 +0.3
no phage control BHIS_CaCl2 no phage control -0.8 +0.2 +1.6 -0.1 +0.5
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