Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02337 and EFB2_02338 are separated by 127 nucleotidesEFB2_02338 and EFB2_02339 are separated by 334 nucleotidesEFB2_02339 and EFB2_02340 are separated by 371 nucleotidesEFB2_02340 and EFB2_02341 are separated by 102 nucleotides EFB2_02337: EFB2_02337 - Superoxide dismutase [Fe], at 2,474,970 to 2,475,551 _02337 EFB2_02338: EFB2_02338 - Murein DD-endopeptidase MepH, at 2,475,679 to 2,476,506 _02338 EFB2_02339: EFB2_02339 - Glutaredoxin 4, at 2,476,841 to 2,477,188 _02339 EFB2_02340: EFB2_02340 - Ribonuclease T, at 2,477,560 to 2,478,207 _02340 EFB2_02341: EFB2_02341 - Lactoylglutathione lyase, at 2,478,310 to 2,478,717 _02341
Group Condition EFB2_02337 EFB2_02338 EFB2_02339 EFB2_02340 EFB2_02341
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 -1.0 N.D. -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.4 +0.4 -0.7 N.D. -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.4 -0.5 N.D. -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 -0.6 N.D. -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.2 N.D. -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 -0.3 N.D. -0.4
no phage control BHIS_CaCl2 no phage control +0.1 -0.3 -0.1 N.D. -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 +0.1 -0.3 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 +0.1 +0.1 N.D. -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.4 -0.1 N.D. -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.3 -0.3 N.D. -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.2 -0.8 N.D. -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 +0.4 -0.4 N.D. -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 +0.4 -0.0 N.D. -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.1 -0.4 N.D. -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.3 +0.3 -0.2 N.D. -0.1
no phage control BHIS no phage control +0.3 +0.1 -0.4 N.D. -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 -0.3 -0.0 N.D. -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.5 +0.2 N.D. +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.4 +0.6 N.D. -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.2 +0.1 N.D. -0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.2 -0.2 N.D. +0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.4 +0.1 -0.3 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.5 +0.0 -0.4 N.D. +0.2
no phage control BHIS no phage control +0.1 +0.5 -0.3 N.D. +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.3 -0.2 N.D. +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.3 +0.2 N.D. -0.2
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.3 -0.1 N.D. +0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.3 +0.3 +0.2 N.D. +0.0
no phage control BHIS no phage control +0.3 +0.5 +0.1 N.D. +0.3
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EFB2_02337
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EFB2_02338
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EFB2_02340
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EFB2_02341
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