Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02285 and EFB2_02286 are separated by 3 nucleotidesEFB2_02286 and EFB2_02287 are separated by 131 nucleotidesEFB2_02287 and EFB2_02288 are separated by 156 nucleotidesEFB2_02288 and EFB2_02289 are separated by 332 nucleotides EFB2_02285: EFB2_02285 - Protein adenylyltransferase SelO, at 2,419,871 to 2,421,307 _02285 EFB2_02286: EFB2_02286 - putative protein YdiE, at 2,421,311 to 2,421,502 _02286 EFB2_02287: EFB2_02287 - Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive, at 2,421,634 to 2,422,680 _02287 EFB2_02288: EFB2_02288 - Phosphoenolpyruvate synthase regulatory protein, at 2,422,837 to 2,423,670 _02288 EFB2_02289: EFB2_02289 - Phosphoenolpyruvate synthase, at 2,424,003 to 2,426,381 _02289
Group Condition EFB2_02285 EFB2_02286 EFB2_02287 EFB2_02288 EFB2_02289
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.4 -0.2 -0.0 -0.6
no phage control BHIS no phage control -0.0 -0.3 -0.4 -0.5 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 -0.5 -0.3 -0.3 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.4 -0.1 -0.5 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -1.0 -0.1 +0.6 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.6 -0.2 -0.1 +0.1
no phage control BHIS_CaCl2 no phage control +0.1 -0.0 -1.1 -0.1 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.5 -1.0 -0.1 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.7 +0.1 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -0.0 -0.7 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -0.1 -0.0 -0.7 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 +0.2 -0.4 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.3 -0.3 -0.1 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 +0.6 -0.1 +0.2 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.5 +0.1 +0.2 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.6 -0.4 +0.5 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.4 -0.5 -0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.4 -0.4 +0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.4 -0.4 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.3 -0.5 +0.6 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 +0.2 -0.4 -0.1 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.3 -0.2 +0.1 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.3 -0.3 -0.2 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.4 -0.2 -0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.2 +0.1 +0.4 -0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.6 -0.1 +0.3 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 +0.0 -0.3 +0.9 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 +0.3 +0.1 +0.4 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.6 +0.3 +0.2 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.4 +0.5 -0.1 +0.4 +0.2
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