Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02262 and EFB2_02263 are separated by 46 nucleotidesEFB2_02263 and EFB2_02264 are separated by 132 nucleotidesEFB2_02264 and EFB2_02265 are separated by 163 nucleotidesEFB2_02265 and EFB2_02266 are separated by 146 nucleotides EFB2_02262: EFB2_02262 - Cell division activator CedA, at 2,399,352 to 2,399,615 _02262 EFB2_02263: EFB2_02263 - L-cystine uptake protein TcyP, at 2,399,662 to 2,401,053 _02263 EFB2_02264: EFB2_02264 - Inner membrane protein YdjM, at 2,401,186 to 2,401,776 _02264 EFB2_02265: EFB2_02265 - Hexitol phosphatase B, at 2,401,940 to 2,402,608 _02265 EFB2_02266: EFB2_02266 - hypothetical protein, at 2,402,755 to 2,403,291 _02266
Group Condition EFB2_02262 EFB2_02263 EFB2_02264 EFB2_02265 EFB2_02266
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.2 -0.8 -0.1 -0.1
no phage control BHIS_CaCl2 no phage control -0.5 -0.6 +0.0 +0.0 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 -0.1 -0.3 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -0.5 -0.1 +0.1 +0.2
no phage control BHIS no phage control -0.1 -0.4 +0.1 +0.0 +0.2
no phage control BHIS no phage control +0.1 -0.5 +0.3 -0.4 +0.3
mixed community no phage control BHIS no phage control with 14 member community +0.2 -0.4 +0.2 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.1 -0.4 -0.1 +0.2
no phage control BHIS no phage control +0.2 -0.3 +0.3 -0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 -0.3 +0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.0 +0.3 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.3 -0.2 -0.1 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.0 -0.3 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.2 -0.2 +0.2 +0.4
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 +0.5 -0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.2 +0.2 -0.0 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.0 -0.2 +0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.2 -0.2 -0.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.2 -0.0 -0.1 +0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.4 +0.2 -0.3 -0.1 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 +0.5 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.0 +0.3 +0.2 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 -0.1 +0.2 +0.3 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 +0.3 +0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.5 +0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 +0.6 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 -0.1 +0.3 +0.1 +0.4
mixed community no phage control BHIS no phage control with 14 member community +0.5 +0.0 +0.3 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.3 +0.1 +0.4 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.3 +0.0 +0.3 +0.1
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