Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02221 and EFB2_02222 are separated by 4 nucleotidesEFB2_02222 and EFB2_02223 are separated by 9 nucleotidesEFB2_02223 and EFB2_02224 are separated by 136 nucleotidesEFB2_02224 and EFB2_02225 are separated by 117 nucleotides EFB2_02221: EFB2_02221 - putative protein YdjI, at 2,356,686 to 2,357,522 _02221 EFB2_02222: EFB2_02222 - putative sugar kinase YdjH, at 2,357,527 to 2,358,474 _02222 EFB2_02223: EFB2_02223 - NADH-specific methylglyoxal reductase, at 2,358,484 to 2,359,464 _02223 EFB2_02224: EFB2_02224 - putative HTH-type transcriptional regulator YdjF, at 2,359,601 to 2,360,359 _02224 EFB2_02225: EFB2_02225 - Inner membrane metabolite transport protein YdjE, at 2,360,477 to 2,361,835 _02225
Group Condition EFB2_02221 EFB2_02222 EFB2_02223 EFB2_02224 EFB2_02225
no phage control BHIS_CaCl2 no phage control -0.9 +0.3 -0.1 -0.5 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.2 +0.1 -0.5 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.1 -0.1 -0.5 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.2 -0.0 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.5 +0.1 +0.1 -0.5 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.2 -0.1 -0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.8 -0.0 +0.1 +0.3 +0.0
no phage control BHIS no phage control +0.1 +0.2 +0.0 -0.1 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.6 -0.0 +0.1 +0.2 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.5 -0.1 -0.1 +0.4 +0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.4 -0.0 -0.4 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.2 -0.2 +0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 +0.2 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 +0.3 -0.1 -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.6 +0.2 -0.3 +0.4 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.4 +0.2 +0.0 -0.4 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.3 +0.3 +0.2 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 +0.1 -0.0 +0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.0 -0.4 +0.0 +0.4
mixed community no phage control BHIS no phage control with 14 member community +0.0 +0.4 +0.2 -0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.3 -0.1 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.2 -0.1 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.2 -0.2 +0.5 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.4 +0.1 -0.2 +0.2 +0.1
no phage control BHIS_CaCl2 no phage control -0.1 +0.3 +0.2 +0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.6 -0.0 +0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.5 -0.1 +0.2 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.2 -0.0 +0.5 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 +0.0 +0.5 +0.3
mixed community no phage control BHIS no phage control with 14 member community +0.4 +0.7 +0.2 +0.2 +0.4
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