Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02218 and EFB2_02219 are separated by 26 nucleotidesEFB2_02219 and EFB2_02220 are separated by 16 nucleotidesEFB2_02220 and EFB2_02221 are separated by 20 nucleotidesEFB2_02221 and EFB2_02222 are separated by 4 nucleotides EFB2_02218: EFB2_02218 - D-arabitol-phosphate dehydrogenase, at 2,353,123 to 2,354,199 _02218 EFB2_02219: EFB2_02219 - Inner membrane metabolite transport protein YdjE, at 2,354,226 to 2,355,605 _02219 EFB2_02220: EFB2_02220 - putative zinc-type alcohol dehydrogenase-like protein YdjJ, at 2,355,622 to 2,356,665 _02220 EFB2_02221: EFB2_02221 - putative protein YdjI, at 2,356,686 to 2,357,522 _02221 EFB2_02222: EFB2_02222 - putative sugar kinase YdjH, at 2,357,527 to 2,358,474 _02222
Group Condition EFB2_02218 EFB2_02219 EFB2_02220 EFB2_02221 EFB2_02222
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.3 -0.3 -0.6 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 -0.0 -0.4 -0.6 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.0 -0.2 -0.5 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 -0.1 -0.5 -0.1
no phage control BHIS_CaCl2 no phage control +0.1 +0.2 -0.1 -0.9 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.2 -0.1 -0.1 -0.1
no phage control BHIS no phage control -0.3 -0.2 -0.1 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -0.3 +0.1 -0.3 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.3 -0.1 +0.3 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.1 +0.6 -0.8 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 +0.2 -0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.1 +0.0 -0.3 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.3 +0.0 +0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.3 -0.1 +0.0 -0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 +0.1 -0.5 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.1 -0.1 +0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.1 +0.1 -0.3 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.3 -0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.3 +0.3 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.3 +0.1 -0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.2 +0.3 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.1 +0.3 -0.3 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 +0.2 +0.1 -0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.2 +0.3 +0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 +0.1 +0.5 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.0 +0.1 +0.4 +0.1
no phage control BHIS no phage control +0.3 +0.1 -0.0 +0.3 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.0 +0.3 +0.6 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.1 +0.3 +0.4 +0.2
mixed community no phage control BHIS no phage control with 14 member community -0.0 +0.3 -0.1 +0.4 +0.7
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