Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02200 and EFB2_02201 are separated by 266 nucleotidesEFB2_02201 and EFB2_02202 are separated by 182 nucleotidesEFB2_02202 and EFB2_02203 are separated by 21 nucleotidesEFB2_02203 and EFB2_02204 are separated by 54 nucleotides EFB2_02200: EFB2_02200 - hypothetical protein, at 2,335,197 to 2,335,445 _02200 EFB2_02201: EFB2_02201 - Diguanylate cyclase DgcP, at 2,335,712 to 2,336,737 _02201 EFB2_02202: EFB2_02202 - hypothetical protein, at 2,336,920 to 2,337,174 _02202 EFB2_02203: EFB2_02203 - hypothetical protein, at 2,337,196 to 2,337,543 _02203 EFB2_02204: EFB2_02204 - 2-nitroimidazole transporter, at 2,337,598 to 2,338,779 _02204
Group Condition EFB2_02200 EFB2_02201 EFB2_02202 EFB2_02203 EFB2_02204
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.4 -0.2 -2.7 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -1.4 +0.3 -1.3 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.7 -0.1 -0.6 -0.5 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 +0.0 -0.8 -0.7 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.1 -0.9 -0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 +0.0 -0.9 -0.7 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.2 -1.5 -0.0 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.7 +0.0 -0.9 +0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 +0.1 -0.2 -0.7 +0.1
no phage control BHIS no phage control -0.4 -0.1 -1.2 +0.5 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 +0.1 -0.6 -0.3 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.3 +0.2 -0.6 -0.6 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.1 +0.1 -1.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.6 +0.2 -0.9 -0.1 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.8 -0.1 -1.3 -0.5 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 +0.6 -1.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.2 +0.1 +0.3 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.0 -1.0 +0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.5 -0.0 +1.0 -1.4 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.6 -0.1 +0.8 -0.6 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.6 -0.1 -0.9 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.7 +0.1 +0.4 -0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.2 -0.1 +1.2 +0.0 -0.2
no phage control BHIS no phage control +0.1 -0.0 -0.9 +0.5 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -1.0 +0.1 +0.4 -0.0 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.4 +0.2 +0.2 +0.5 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.1 +0.6 -0.8 +0.3
mixed community no phage control BHIS no phage control with 14 member community +0.7 +0.1 -0.3 -0.4 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.2 +0.5 +0.8 +0.2
no phage control BHIS_CaCl2 no phage control +0.7 -0.0 +0.1 +0.8 +0.1
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EFB2_02200
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EFB2_02201
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EFB2_02203
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EFB2_02204
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