Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02163 and EFB2_02164 are separated by 0 nucleotidesEFB2_02164 and EFB2_02165 are separated by 20 nucleotidesEFB2_02165 and EFB2_02166 are separated by 117 nucleotidesEFB2_02166 and EFB2_02167 are separated by 73 nucleotides EFB2_02163: EFB2_02163 - Serine/threonine-protein phosphatase 1, at 2,297,044 to 2,297,700 _02163 EFB2_02164: EFB2_02164 - hypothetical protein, at 2,297,701 to 2,297,976 _02164 EFB2_02165: EFB2_02165 - putative protein YebV, at 2,297,997 to 2,298,233 _02165 EFB2_02166: EFB2_02166 - Ribosomal RNA small subunit methyltransferase F, at 2,298,351 to 2,299,796 _02166 EFB2_02167: EFB2_02167 - Intermembrane transport protein YebT, at 2,299,870 to 2,302,503 _02167
Group Condition EFB2_02163 EFB2_02164 EFB2_02165 EFB2_02166 EFB2_02167
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.0 +0.1 -1.1 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.5 -0.2 -0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.5 +0.3 -0.6 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.7 +0.2 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.2 -0.2 -0.4 -0.1
no phage control BHIS no phage control -0.2 +0.2 +0.1 -0.7 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.4 +0.3 -0.5 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.1 +0.1 -0.6 +0.1
no phage control BHIS no phage control -0.0 +0.2 +0.3 -0.7 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.2 +0.2 -0.6 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 -0.6 +0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.6 +0.1 +0.3 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.5 -0.3 -0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.3 +0.2 +0.1 -0.4 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.4 +0.4 +0.2 -0.6 -0.0
no phage control BHIS_CaCl2 no phage control -0.1 -0.3 +0.2 +0.2 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 -0.3 -0.2 +0.7 -0.0
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.4 -0.3 +0.1 +0.1
no phage control BHIS_CaCl2 no phage control +0.1 -0.2 +0.2 +0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 -0.2 +0.6 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.4 -0.0 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 +0.2 +0.3 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 +0.1 +0.4 +0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.6 +0.2 +0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.2 +0.3 +0.3 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.2 +0.1 +0.5 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -0.2 +0.6 +0.6 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.5 +0.5 +0.1 +0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.4 +0.5 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 +0.5 +0.4 +0.5 +0.0
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