Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02129 and EFB2_02130 overlap by 1 nucleotidesEFB2_02130 and EFB2_02131 overlap by 4 nucleotidesEFB2_02131 and EFB2_02132 are separated by 270 nucleotidesEFB2_02132 and EFB2_02133 are separated by 497 nucleotides EFB2_02129: EFB2_02129 - hypothetical protein, at 2,270,407 to 2,271,006 _02129 EFB2_02130: EFB2_02130 - Putative nuclease YbcO, at 2,271,006 to 2,271,296 _02130 EFB2_02131: EFB2_02131 - hypothetical protein, at 2,271,293 to 2,271,847 _02131 EFB2_02132: EFB2_02132 - hypothetical protein, at 2,272,118 to 2,272,729 _02132 EFB2_02133: EFB2_02133 - hypothetical protein, at 2,273,227 to 2,273,562 _02133
Group Condition EFB2_02129 EFB2_02130 EFB2_02131 EFB2_02132 EFB2_02133
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.5 -0.2 -0.2 -1.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.2 -0.5 -0.3 -1.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.8 +0.0 -0.2 -1.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.1 +0.2 -0.5 -1.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -0.9 +0.1 -0.3 -0.9
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.4 +0.0 -0.3 -1.2
no phage control BHIS_CaCl2 no phage control -0.1 -0.5 -0.2 -0.1 -0.9
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 -0.6 -0.0 -0.3 -1.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.4 -0.2 -0.2 -1.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 -0.4 +0.1 -0.6 -0.5
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 -0.2 +0.2 -0.1 -1.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.0 -0.6 +0.0 -0.9
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.2 +0.1 -0.2 -1.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -0.8 +0.3 -0.2 -0.9
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.5 +0.3 -0.4 -0.5
mixed community no phage control BHIS no phage control with 14 member community +0.0 -0.3 +0.2 -0.3 -0.9
no phage control BHIS no phage control +0.1 -0.4 +0.1 -0.5 -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 +0.4 -0.4 -0.9
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.5 +0.2 -0.4 -0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.4 -0.6 +0.2 +0.0 -1.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.8 +0.3 +0.0 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.5 +0.3 -0.3 -0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.3 -0.2 -0.1 -1.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 -0.3 +0.4 +0.0 -0.9
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 +0.5 -0.1 -1.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 +0.1 +0.1 +0.1 -1.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.1 +0.5 +0.0 -0.9
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.4 +0.3 +0.2 -0.1 -0.8
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.2 +0.7 -0.0 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.2 +0.2 +0.8 -0.6
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