Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02115 and EFB2_02116 are separated by 96 nucleotidesEFB2_02116 and EFB2_02117 overlap by 4 nucleotidesEFB2_02117 and EFB2_02118 are separated by 77 nucleotidesEFB2_02118 and EFB2_02119 are separated by 6 nucleotides EFB2_02115: EFB2_02115 - hypothetical protein, at 2,263,140 to 2,263,559 _02115 EFB2_02116: EFB2_02116 - hypothetical protein, at 2,263,656 to 2,263,898 _02116 EFB2_02117: EFB2_02117 - hypothetical protein, at 2,263,895 to 2,264,317 _02117 EFB2_02118: EFB2_02118 - hypothetical protein, at 2,264,395 to 2,265,183 _02118 EFB2_02119: EFB2_02119 - DNA replication protein DnaC, at 2,265,190 to 2,265,936 _02119
Group Condition EFB2_02115 EFB2_02116 EFB2_02117 EFB2_02118 EFB2_02119
no phage control BHIS_CaCl2 no phage control N.D. -0.8 -0.6 +0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. -0.2 -0.7 -0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.5 +0.0 -0.1 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.8 +0.1 -0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.2 -0.8 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.0 -0.4 -0.1 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.2 -0.8 +0.2 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. -0.5 -0.4 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.1 -0.8 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.2 +0.1 +0.1 -0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.1 +0.2 +0.0 -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.4 +0.3 +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.4 -0.9 +0.5 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.3 +0.4 +0.1 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.4 -0.2 +0.4 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. +0.4 -0.6 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.5 -0.5 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. +0.5 -0.3 -0.0 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.3 -0.6 +0.3 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.6 -0.6 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.1 +0.8 -0.1 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.6 -0.3 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.7 -0.1 -0.2 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.2 +0.2 +0.3 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.1 +0.7 +0.2 -0.5
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.2 +0.5 +0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.4 +0.3 +0.2 -0.1
no phage control BHIS no phage control N.D. +0.4 -0.1 +0.3 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.3 +0.8 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.7 +0.6 +0.0 +0.0
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EFB2_02115
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EFB2_02116
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EFB2_02118
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EFB2_02119
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