Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02110 and EFB2_02111 are separated by 100 nucleotidesEFB2_02111 and EFB2_02112 are separated by 74 nucleotidesEFB2_02112 and EFB2_02113 overlap by 1 nucleotidesEFB2_02113 and EFB2_02114 are separated by 411 nucleotides EFB2_02110: EFB2_02110 - Exodeoxyribonuclease 8, at 2,258,753 to 2,261,428 _02110 EFB2_02111: EFB2_02111 - hypothetical protein, at 2,261,529 to 2,261,804 _02111 EFB2_02112: EFB2_02112 - hypothetical protein, at 2,261,879 to 2,262,049 _02112 EFB2_02113: EFB2_02113 - Killing protein KilR, at 2,262,049 to 2,262,270 _02113 EFB2_02114: EFB2_02114 - hypothetical protein, at 2,262,682 to 2,262,834 _02114
Group Condition EFB2_02110 EFB2_02111 EFB2_02112 EFB2_02113 EFB2_02114
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -3.5 N.D. -1.4 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -3.4 N.D. -1.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -4.3 N.D. +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -3.9 N.D. +0.3 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -2.2 N.D. -1.0 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 -2.5 N.D. -1.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -2.6 N.D. -0.7 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.2 -1.6 N.D. -1.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -2.0 N.D. -1.0 +0.1
no phage control BHIS no phage control -0.1 -2.1 N.D. -1.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -1.6 N.D. -1.0 -0.3
mixed community no phage control BHIS no phage control with 14 member community -0.0 -3.0 N.D. +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -1.8 N.D. -0.8 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -1.7 N.D. -1.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -3.1 N.D. +0.4 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -1.9 N.D. -0.9 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -2.4 N.D. -0.0 -0.1
no phage control BHIS no phage control -0.0 -1.8 N.D. -1.0 +0.2
no phage control BHIS_CaCl2 no phage control -0.2 -2.3 N.D. -0.1 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -2.4 N.D. -0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -2.7 N.D. +0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -2.3 N.D. +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -2.2 N.D. +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -1.9 N.D. -0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -1.5 N.D. -0.8 +0.3
no phage control BHIS_CaCl2 no phage control -0.1 -1.2 N.D. -0.9 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -2.0 N.D. +0.5 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -1.9 N.D. +0.4 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -1.9 N.D. +0.2 +0.4
no phage control BHIS_CaCl2 no phage control +0.4 -0.7 N.D. +0.7 +0.7
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