Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02100 and EFB2_02101 are separated by 22 nucleotidesEFB2_02101 and EFB2_02102 are separated by 101 nucleotidesEFB2_02102 and EFB2_02103 are separated by 138 nucleotidesEFB2_02103 and EFB2_02104 are separated by 3 nucleotides EFB2_02100: EFB2_02100 - Exodeoxyribonuclease 10, at 2,252,282 to 2,252,944 _02100 EFB2_02101: EFB2_02101 - hypothetical protein, at 2,252,967 to 2,253,623 _02101 EFB2_02102: EFB2_02102 - DNA polymerase III subunit theta, at 2,253,725 to 2,253,955 _02102 EFB2_02103: EFB2_02103 - Protein YobA, at 2,254,094 to 2,254,468 _02103 EFB2_02104: EFB2_02104 - Inner membrane protein YebZ, at 2,254,472 to 2,255,344 _02104
Group Condition EFB2_02100 EFB2_02101 EFB2_02102 EFB2_02103 EFB2_02104
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 -0.7 -0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 -0.5 -0.2 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -1.1 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 +0.7 -0.9 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.3 -0.4 +0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.2 -0.2 -0.4 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.0 +0.3 -0.4 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 -0.4 -0.0 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.3 +0.1 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.3 -0.4 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.1 +0.4 -0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 +0.3 -0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.3 +0.3 +0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community -0.3 +0.1 +0.1 +0.2 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.3 +0.6 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.1 +0.8 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.3 +0.1 +0.4 -0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 +0.1 +0.1 +0.4 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.3 +0.4 -0.2 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.2 +0.2 -0.1 +0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 +0.5 -0.2 +0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 +0.1 +0.3 +0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.2 +0.8 -0.0 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.1 +0.7 -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.0 +0.5 +0.1 +0.2
no phage control BHIS no phage control +0.1 -0.0 +0.3 +0.3 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.2 +0.0 +0.7 +0.0 +0.1
no phage control BHIS_CaCl2 no phage control +0.4 +0.2 +0.3 +0.4 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.2 +0.6 +0.1 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 +0.5 +0.5 +0.1
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EFB2_02100
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EFB2_02101
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EFB2_02103
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EFB2_02104
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