Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02097 and EFB2_02098 are separated by 59 nucleotidesEFB2_02098 and EFB2_02099 are separated by 208 nucleotidesEFB2_02099 and EFB2_02100 overlap by 4 nucleotidesEFB2_02100 and EFB2_02101 are separated by 22 nucleotides EFB2_02097: EFB2_02097 - hypothetical protein, at 2,249,187 to 2,249,297 _02097 EFB2_02098: EFB2_02098 - Inner membrane protein YebE, at 2,249,357 to 2,250,016 _02098 EFB2_02099: EFB2_02099 - Protease 2, at 2,250,225 to 2,252,285 _02099 EFB2_02100: EFB2_02100 - Exodeoxyribonuclease 10, at 2,252,282 to 2,252,944 _02100 EFB2_02101: EFB2_02101 - hypothetical protein, at 2,252,967 to 2,253,623 _02101
Group Condition EFB2_02097 EFB2_02098 EFB2_02099 EFB2_02100 EFB2_02101
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 -0.1 +0.1 -0.2 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.3 +0.1 -0.0 -0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 -0.1 +0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.1 -0.2 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.3 +0.1 -0.2 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.2 +0.2 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.4 +0.2 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.4 -0.0 +0.1 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.1 +0.0 -0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.3 -0.1 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 +0.1 +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.2 +0.2 +0.0 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -0.2 +0.2 +0.3 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 +0.1 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.3 +0.1 -0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community +0.3 -0.1 +0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.3 +0.1 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 +0.3 -0.0 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.1 +0.2 +0.3 +0.1
mixed community no phage control BHIS no phage control with 14 member community -0.0 +0.5 +0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.3 +0.1 -0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.3 +0.1 -0.1 +0.2
no phage control BHIS_CaCl2 no phage control -0.3 +0.3 -0.1 +0.4 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.3 +0.2 +0.1 -0.0
no phage control BHIS no phage control +0.1 +0.3 +0.1 +0.1 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 +0.2 +0.1 +0.2 +0.2
no phage control BHIS no phage control +0.1 +0.3 +0.1 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.3 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 +0.3 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 +0.2 +0.1 +0.1 +0.1
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EFB2_02097
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EFB2_02098
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EFB2_02100
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EFB2_02101
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