Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02071 and EFB2_02072 overlap by 4 nucleotidesEFB2_02072 and EFB2_02073 are separated by 40 nucleotidesEFB2_02073 and EFB2_02074 are separated by 52 nucleotidesEFB2_02074 and EFB2_02075 overlap by 4 nucleotides EFB2_02071: EFB2_02071 - tRNA U34 carboxymethyltransferase, at 2,224,776 to 2,225,747 _02071 EFB2_02072: EFB2_02072 - Carboxy-S-adenosyl-L-methionine synthase, at 2,225,744 to 2,226,487 _02072 EFB2_02073: EFB2_02073 - Inner membrane protein YecN, at 2,226,528 to 2,226,923 _02073 EFB2_02074: EFB2_02074 - hypothetical protein, at 2,226,976 to 2,227,794 _02074 EFB2_02075: EFB2_02075 - Isochorismatase family protein YecD, at 2,227,791 to 2,228,357 _02075
Group Condition EFB2_02071 EFB2_02072 EFB2_02073 EFB2_02074 EFB2_02075
no phage control BHIS_CaCl2 no phage control -0.9 -0.3 -0.2 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 -0.3 -0.4 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.6 -0.1 -0.2 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.8 -0.0 -0.1 -0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -0.1 -0.4 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 -0.1 -0.1 -0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.5 -0.2 +0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.4 +0.0 -0.1 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.3 -0.4 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.3 -0.3 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 -0.8 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.2 -0.6 +0.0 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.3 -0.2 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.1 -0.1 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 +0.0 -0.0 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 +0.2 +0.5 -0.4 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.3 -0.3 +0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 -0.1 +0.2 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 +0.4 -0.2 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.0 +0.3 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.3 +0.2 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.3 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.1 -0.2 +0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 -0.1 +0.0 +0.3 -0.1
no phage control BHIS no phage control -0.1 +0.2 -0.0 +0.3 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.4 +0.0 -0.0 +0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.5 +0.1 -0.3 +0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.2 +0.4 +0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 +0.3 +0.2 +0.2
mixed community no phage control BHIS no phage control with 14 member community +0.3 +0.3 +0.2 +0.1 +0.4
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EFB2_02071
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EFB2_02072
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EFB2_02074
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EFB2_02075
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