Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02049 and EFB2_02050 are separated by 6 nucleotidesEFB2_02050 and EFB2_02051 are separated by 779 nucleotidesEFB2_02051 and EFB2_02052 are separated by 2 nucleotidesEFB2_02052 and EFB2_02053 are separated by 126 nucleotides EFB2_02049: EFB2_02049 - Trehalose-6-phosphate synthase, at 2,200,453 to 2,201,877 _02049 EFB2_02050: EFB2_02050 - Universal stress protein C, at 2,201,884 to 2,202,312 _02050 EFB2_02051: EFB2_02051 - Flagellar transcriptional regulator FlhD, at 2,203,092 to 2,203,442 _02051 EFB2_02052: EFB2_02052 - Flagellar transcriptional regulator FlhC, at 2,203,445 to 2,204,023 _02052 EFB2_02053: EFB2_02053 - Motility protein A, at 2,204,150 to 2,205,037 _02053
Group Condition EFB2_02049 EFB2_02050 EFB2_02051 EFB2_02052 EFB2_02053
no phage control BHIS_CaCl2 no phage control +0.3 +0.1 -1.0 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.1 +0.1 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.9 +0.2 +0.3 +0.2
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.2 +0.1 -0.4 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -0.2 -0.1 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.5 +0.1 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.3 -0.2 +0.2 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.3 -0.1 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 -0.6 -0.1 +0.4 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.4 -0.2 -0.3 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.4 +0.1 +0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.3 +0.4 +0.3 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.0 -0.3 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.4 +0.4 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.3 +0.1 +0.4 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 -0.6 +0.5 +0.2 +0.5
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.2 +0.2 +0.0 +0.3 -0.3
no phage control BHIS_CaCl2 no phage control +0.0 -0.3 +0.4 +0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 +0.3 +0.3 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -0.1 -0.1 +0.4 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.3 +0.1 +0.3 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 -0.1 +0.5 +0.3 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.1 +0.1 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 +0.3 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.3 -0.0 +0.0 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.2 +0.1 +0.4 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.2 +0.2 +0.1 +0.2
no phage control BHIS no phage control -0.0 +0.0 +0.5 +0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 -0.1 +0.5 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.3 +0.4 +0.2 +0.2
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