Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02036 and EFB2_02037 are separated by 12 nucleotidesEFB2_02037 and EFB2_02038 are separated by 195 nucleotidesEFB2_02038 and EFB2_02039 are separated by 61 nucleotidesEFB2_02039 and EFB2_02040 are separated by 190 nucleotides EFB2_02036: EFB2_02036 - tRNA-Cys, at 2,190,076 to 2,190,149 _02036 EFB2_02037: EFB2_02037 - tRNA-Leu, at 2,190,162 to 2,190,248 _02037 EFB2_02038: EFB2_02038 - hypothetical protein, at 2,190,444 to 2,191,109 _02038 EFB2_02039: EFB2_02039 - Tyrosine-specific transport protein, at 2,191,171 to 2,192,382 _02039 EFB2_02040: EFB2_02040 - hypothetical protein, at 2,192,573 to 2,192,812 _02040
Group Condition EFB2_02036 EFB2_02037 EFB2_02038 EFB2_02039 EFB2_02040
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.3 +0.0 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.1 +0.1 -0.8
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.4 -0.0 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.2 +0.0 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -0.4 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.1 +0.1 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. +0.1 -0.0 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.0 +0.1 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.0 -0.0 -0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.2 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.2 +0.2 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.4 +0.0 -0.8
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -0.3 -0.1 +0.1
no phage control BHIS no phage control N.D. N.D. -0.1 +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.1 +0.1 -0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. N.D. -0.2 +0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.0 +0.2 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.1 +0.2 -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.1 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. +0.0 +0.2 -0.4
no phage control BHIS_CaCl2 no phage control N.D. N.D. +0.1 +0.2 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. N.D. +0.2 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. N.D. +0.0 +0.3 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. +0.2 +0.2 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.4 +0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community N.D. N.D. +0.1 +0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.0 +0.2 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.1 +0.2 +0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.4 +0.2 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.5 +0.1 +0.5
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EFB2_02036
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EFB2_02037
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EFB2_02039
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EFB2_02040
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