Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_02024 and EFB2_02025 are separated by 30 nucleotidesEFB2_02025 and EFB2_02026 are separated by 104 nucleotidesEFB2_02026 and EFB2_02027 overlap by 31 nucleotidesEFB2_02027 and EFB2_02028 are separated by 14 nucleotides EFB2_02024: EFB2_02024 - Regulator of sigma S factor FliZ, at 2,181,041 to 2,181,592 _02024 EFB2_02025: EFB2_02025 - L-cystine-binding protein FliY, at 2,181,623 to 2,182,480 _02025 EFB2_02026: EFB2_02026 - D-cysteine desulfhydrase, at 2,182,585 to 2,183,400 _02026 EFB2_02027: EFB2_02027 - D-cysteine desulfhydrase, at 2,183,370 to 2,183,570 _02027 EFB2_02028: EFB2_02028 - L-cystine transport system permease protein YecS, at 2,183,585 to 2,184,253 _02028
Group Condition EFB2_02024 EFB2_02025 EFB2_02026 EFB2_02027 EFB2_02028
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.6 +0.2 +0.1 -1.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 -0.2 -0.7 -0.0
no phage control BHIS no phage control -0.3 +0.2 -0.6 -0.2 +0.0
mixed community no phage control BHIS no phage control with 14 member community -0.3 -0.2 -0.4 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.7 +0.1 +0.2 -0.6 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.0 +0.2 -0.6 -0.5
no phage control BHIS_CaCl2 no phage control -0.1 +0.2 -0.1 -0.4 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 -0.3 +0.5 -1.2 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.4 +0.2 -0.0 -0.4 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.2 +0.1 +0.4 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.2 +0.0 -0.4 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.6 +0.3 -0.2 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 +0.3 -0.6 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.2 +0.3 -0.3 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.4 -0.5 +0.7 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 +0.1 +0.3 -0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.1 -0.3 +0.4 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 +0.3 +0.3 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.3 +0.2 -0.4 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.8 -0.3 -0.2 +0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.2 -0.3 +0.7 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -0.1 +0.5 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 +0.3 +0.0 -0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 +0.3 +0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 -0.3 +0.3 +0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.2 +0.1 +0.6 +0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.3 +0.1 +0.1 +0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.1 +0.2 +0.7 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.2 +0.4 +0.9 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.2 +0.8 +0.2
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EFB2_02024
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EFB2_02028
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